Variant report

Variant	rs17213683
Chromosome Location	chr6:13747642-13747643
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13747048..13748923-chr6:13762541..13766455,3	K562	blood:
2	chr6:13711278..13712838-chr6:13745542..13747719,2	MCF-7	breast:
3	chr6:13711887..13713957-chr6:13747635..13751147,3	K562	blood:

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10484251	0.91[CHB][hapmap]
rs11753232	0.91[CHB][hapmap]
rs11759518	0.91[CHB][hapmap]
rs13217918	0.81[ASN][1000 genomes]
rs17797988	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17797994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1963222	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1963223	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299026	0.90[CHB][hapmap]
rs2299027	0.91[CHB][hapmap]
rs35930359	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3757256	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4712100	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715512	0.84[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55885615	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56272112	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6935036	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72831050	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72831051	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72831055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72831059	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72831061	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7760689	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9475227	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475276	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13747200-13747800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:13747200-13748800	Enhancers	Primary T cells fromperipheralblood	blood
3	chr6:13747200-13748800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:13747200-13748800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:13747400-13747800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:13747400-13748200	Active TSS	A549	lung
7	chr6:13747400-13748800	Enhancers	GM12878-XiMat	blood

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