Variant report

Variant	rs55885615
Chromosome Location	chr6:13755331-13755332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17213683	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17797988	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17797994	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1963222	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1963223	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35930359	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4712100	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56272112	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72831051	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72831055	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72831059	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72831061	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7760689	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9475227	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9475276	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3354032	chr6:13755030-13755522	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13755000-13755400	Enhancers	Aorta	Aorta
2	chr6:13755000-13755400	Enhancers	Esophagus	oesophagus
3	chr6:13755200-13755600	Enhancers	Fetal Heart	heart
4	chr6:13755200-13755600	Enhancers	Fetal Muscle Leg	muscle
5	chr6:13755200-13756000	Enhancers	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links