Variant report

Variant	rs11755163
Chromosome Location	chr6:142680533-142680534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10457739	1.00[YRI][hapmap]
rs225647	1.00[YRI][hapmap]
rs225694	1.00[YRI][hapmap]
rs6570507	1.00[YRI][hapmap]
rs6570508	1.00[YRI][hapmap]
rs7753012	1.00[YRI][hapmap]
rs9389986	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142672600-142680800	Weak transcription	Fetal Brain Male	brain
2	chr6:142676400-142681000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:142676800-142688600	Weak transcription	Fetal Heart	heart
4	chr6:142677000-142682000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:142677000-142682000	Weak transcription	Placenta	Placenta
6	chr6:142677600-142681400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:142677600-142682200	Enhancers	A549	lung
8	chr6:142677800-142681000	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:142677800-142682400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:142677800-142682400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:142678000-142682400	Weak transcription	HMEC	breast
12	chr6:142679000-142682200	Weak transcription	Fetal Intestine Large	intestine
13	chr6:142679200-142681000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:142679200-142681200	Enhancers	Primary T cells from cord blood	blood
15	chr6:142679400-142680800	Enhancers	Liver	Liver
16	chr6:142679400-142681200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:142679400-142684800	Weak transcription	Fetal Brain Female	brain
18	chr6:142679400-142688200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:142679400-142693200	Weak transcription	Hela-S3	cervix
20	chr6:142679600-142680600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:142679600-142680600	Enhancers	Fetal Thymus	thymus
22	chr6:142679600-142682200	Weak transcription	HSMM	muscle
23	chr6:142679600-142683000	Weak transcription	Fetal Kidney	kidney
24	chr6:142679800-142680600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:142679800-142680600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr6:142680000-142680800	Enhancers	Stomach Mucosa	stomach
27	chr6:142680200-142680600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:142680200-142680800	Enhancers	Fetal Intestine Small	intestine
29	chr6:142680200-142680800	Enhancers	NHEK	skin
30	chr6:142680200-142681000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:142680200-142681000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:142680200-142681000	Enhancers	HUVEC	blood vessel
33	chr6:142680400-142680800	Flanking Active TSS	Fetal Lung	lung
34	chr6:142680400-142681000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:142680400-142681000	Enhancers	Thymus	Thymus
36	chr6:142680400-142681000	Enhancers	NHLF	lung
37	chr6:142680400-142681200	Enhancers	HepG2	liver
38	chr6:142680400-142681400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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