Variant report

Variant	rs11755391
Chromosome Location	chr6:35420967-35420968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35418643..35423313-chr6:35462563..35468017,10	K562	blood:
2	chr6:35259972..35262009-chr6:35419216..35421184,2	MCF-7	breast:
3	chr6:35253202..35255574-chr6:35420736..35422300,2	MCF-7	breast:
4	chr6:35415818..35424678-chr6:35432486..35440672,36	K562	blood:
5	chr6:35309852..35312289-chr6:35417832..35421264,4	K562	blood:
6	chr6:35418617..35424875-chr6:35434196..35438070,12	MCF-7	breast:
7	chr6:35308697..35314051-chr6:35417510..35421585,8	K562	blood:
8	chr6:35262981..35267829-chr6:35418945..35424124,7	K562	blood:
9	chr6:35309118..35313462-chr6:35418133..35422102,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction
ENSG00000112033	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000007866	Chromatin interaction
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10947548	0.81[EUR][1000 genomes]
rs10947550	0.81[EUR][1000 genomes]
rs12212952	0.82[AMR][1000 genomes]
rs13214239	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2395626	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3800377	0.83[EUR][1000 genomes]
rs3800378	0.84[AMR][1000 genomes]
rs4713862	0.81[AMR][1000 genomes]
rs9470029	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
4	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
5	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
6	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
7	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11755391	RPL10A	cis	Whole Blood	GTEx
rs11755391	RPL10A	cis	Artery Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35419200-35421200	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr6:35419200-35421400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:35419600-35421000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:35419600-35421000	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr6:35419600-35421000	Active TSS	Fetal Brain Female	brain
6	chr6:35419600-35421200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr6:35419600-35421200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:35419600-35421200	Active TSS	Psoas Muscle	Psoas
9	chr6:35419600-35421200	Active TSS	Right Atrium	heart
10	chr6:35419600-35421400	Active TSS	Ovary	ovary
11	chr6:35419600-35421600	Active TSS	Aorta	Aorta
12	chr6:35419800-35421000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:35419800-35421000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:35419800-35421000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:35419800-35421000	Active TSS	Fetal Lung	lung
16	chr6:35419800-35421000	Active TSS	Fetal Stomach	stomach
17	chr6:35419800-35421000	Active TSS	Thymus	Thymus
18	chr6:35419800-35421000	Active TSS	K562	blood
19	chr6:35419800-35421000	Active TSS	NHLF	lung
20	chr6:35419800-35421200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:35419800-35421200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:35419800-35421200	Active TSS	Brain Anterior Caudate	brain
23	chr6:35419800-35421200	Active TSS	HSMMtube	muscle
24	chr6:35420000-35421000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:35420000-35421400	Active TSS	Fetal Muscle Trunk	muscle
26	chr6:35420400-35421000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr6:35420400-35421000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr6:35420400-35421200	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr6:35420400-35421200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr6:35420400-35421200	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr6:35420400-35421400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:35420400-35421400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:35420400-35421600	Flanking Active TSS	Dnd41	blood
34	chr6:35420400-35421800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
35	chr6:35420400-35421800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr6:35420600-35421000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:35420600-35421000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
38	chr6:35420600-35421000	Flanking Active TSS	Primary B cells from peripheral blood	blood
39	chr6:35420600-35421000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:35420600-35421000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr6:35420600-35421000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr6:35420600-35421000	Active TSS	Brain Germinal Matrix	brain
43	chr6:35420600-35421000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr6:35420600-35421000	Active TSS	Colonic Mucosa	Colon
45	chr6:35420600-35421000	Active TSS	Fetal Brain Male	brain
46	chr6:35420600-35421000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
47	chr6:35420600-35421200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
48	chr6:35420600-35421200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr6:35420600-35421200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:35420600-35421200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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