Variant report

Variant	rs11755586
Chromosome Location	chr6:166986767-166986768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166982541..166984779-chr6:166986370..166988271,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12661820	0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap]
rs3799611	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5592	chr6:166958317-167002951	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029530	chr6:166977678-167016052	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11755586	C6orf208	cis	cerebellum	SCAN
rs11755586	PHF10	cis	parietal	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166974000-166989600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:166974400-166992400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:166976400-166988600	Weak transcription	Ovary	ovary
4	chr6:166979400-166996600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:166979400-166997600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:166981200-166992200	Weak transcription	HSMMtube	muscle
7	chr6:166981800-167002400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:166984600-166986800	Enhancers	Fetal Brain Female	brain
9	chr6:166984600-166987200	Enhancers	NH-A	brain
10	chr6:166985000-166987200	Enhancers	Fetal Heart	heart
11	chr6:166985400-166986800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:166985600-166986800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:166985600-166987200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr6:166985600-166987600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:166985600-166987600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:166985800-166986800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:166985800-166986800	Enhancers	Brain Substantia Nigra	brain
18	chr6:166985800-166986800	Enhancers	Fetal Stomach	stomach
19	chr6:166985800-166987200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:166985800-166987200	Enhancers	Brain Angular Gyrus	brain
21	chr6:166985800-166987400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:166985800-166987600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:166985800-166987600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:166985800-166987600	Enhancers	Fetal Muscle Leg	muscle
25	chr6:166986000-166986800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:166986000-166986800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:166986000-166986800	Enhancers	Brain Anterior Caudate	brain
28	chr6:166986000-166986800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:166986000-166987000	Enhancers	Brain Cingulate Gyrus	brain
30	chr6:166986000-166987000	Enhancers	Duodenum Mucosa	Duodenum
31	chr6:166986000-166987000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr6:166986000-166987000	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr6:166986000-166987000	Enhancers	Spleen	Spleen
34	chr6:166986000-166987200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:166986000-166987200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:166986000-166987200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:166986000-166987200	Enhancers	Left Ventricle	heart
38	chr6:166986000-166987200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr6:166986000-166987400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:166986000-166987400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:166986000-166987600	Enhancers	H1 Cell Line	embryonic stem cell
42	chr6:166986000-166987600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr6:166986000-166987600	Enhancers	H9 Cell Line	embryonic stem cell
44	chr6:166986000-166987600	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr6:166986000-166987600	Enhancers	Fetal Muscle Trunk	muscle
46	chr6:166986000-166987800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:166986000-166987800	Enhancers	Lung	lung
48	chr6:166986000-166988800	Enhancers	Right Ventricle	heart
49	chr6:166986000-166996400	Weak transcription	Fetal Kidney	kidney
50	chr6:166986200-166986800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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