Variant report

Variant	rs11755998
Chromosome Location	chr6:82463790-82463791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr6:82463651-82463957	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr6:82463636-82463953	Fibrobl	skin:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
3	CTCF	chr6:82463760-82463910	BE2_C	brain:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
4	CTCF	chr6:82463644-82463923	H1-hESC	embryonic stem cell:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
5	POLR2A	chr6:82460382-82463969	Hela-S3	cervix:	n/a	n/a
6	CTCF	chr6:82463654-82463918	GM19240	blood:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
7	MAX	chr6:82462178-82463896	K562	blood:	n/a	chr6:82462514-82462524 chr6:82462658-82462668
8	RAD21	chr6:82463548-82463954	HepG2	liver:	n/a	chr6:82463771-82463790
9	CTCF	chr6:82463740-82463890	HFF-Myc	foreskin:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
10	MYC	chr6:82461207-82464338	NB4	blood:	n/a	chr6:82462514-82462524 chr6:82462658-82462668
11	REST	chr6:82460988-82464217	HL-60	blood:	n/a	chr6:82462072-82462085 chr6:82462064-82462077 chr6:82463202-82463215 chr6:82463791-82463804 chr6:82463563-82463573
12	MAZ	chr6:82461920-82463960	K562	blood:	n/a	chr6:82462514-82462524 chr6:82462658-82462668
13	ZNF143	chr6:82463597-82463927	K562	blood:	n/a	n/a
14	MXI1	chr6:82459848-82464048	IMR90	lung:	n/a	n/a
15	HA-E2F1	chr6:82462818-82463809	Hela-S3	cervix:	n/a	chr6:82463038-82463048
16	CTBP2	chr6:82461178-82463903	H1-hESC	embryonic stem cell:	n/a	n/a
17	RAD21	chr6:82463036-82464089	MCF-7	breast:	n/a	chr6:82463048-82463061 chr6:82463771-82463790
18	POLR2A	chr6:82461966-82463876	PBDE	blood:	n/a	n/a
19	CTCF	chr6:82463639-82463938	A549	lung:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
20	ZNF143	chr6:82463609-82463946	GM12878	blood:	n/a	n/a
21	RAD21	chr6:82462935-82464110	MCF-7	breast:	n/a	chr6:82463048-82463061 chr6:82463771-82463790
22	RFX5	chr6:82463782-82463825	GM12878	blood:	n/a	n/a
23	YY1	chr6:82463701-82463877	A549	lung:	n/a	chr6:82463808-82463820 chr6:82463773-82463782 chr6:82463805-82463821
24	CTCF	chr6:82463660-82463810	GM12866	blood:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
25	POLR2A	chr6:82459317-82463996	Hela-S3	cervix:	n/a	n/a
26	HDAC2	chr6:82460963-82464072	MCF-7	breast:	n/a	chr6:82461048-82461062
27	RELA	chr6:82462876-82463888	GM19099	blood:	n/a	n/a
28	YY1	chr6:82463592-82463968	K562	blood:	n/a	chr6:82463808-82463820 chr6:82463773-82463782 chr6:82463805-82463821
29	RAD21	chr6:82461289-82464026	H1-hESC	embryonic stem cell:	n/a	chr6:82463048-82463061 chr6:82463771-82463790 chr6:82462146-82462155
30	CTCF	chr6:82463720-82463870	NHDF-neo	bronchial:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
31	CTCF	chr6:82463740-82463890	HA-sp	spinal cord:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
32	ELF1	chr6:82463467-82463966	GM12878	blood:	n/a	chr6:82463559-82463568
33	RAD21	chr6:82459346-82464069	Hela-S3	cervix:	n/a	chr6:82463048-82463061 chr6:82463771-82463790 chr6:82462146-82462155
34	CTCF	chr6:82463000-82464040	MCF-7	breast:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
35	CTCF	chr6:82463652-82463910	GM12891	blood:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
36	CTCF	chr6:82463680-82463830	NHEK	skin:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
37	MAX	chr6:82461835-82463945	K562	blood:	n/a	chr6:82462514-82462524 chr6:82462658-82462668
38	CBX3	chr6:82463558-82463896	K562	blood:	n/a	n/a
39	ZNF263	chr6:82460578-82464055	HEK293-T-REx	kidney:	n/a	n/a
40	CTCF	chr6:82463657-82463910	A549	lung:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
41	CTCF	chr6:82463720-82463870	HEEpiC	esophagus:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
42	SMC3	chr6:82463168-82463856	HepG2	liver:	n/a	n/a
43	BHLHE40	chr6:82461208-82463938	HepG2	liver:	n/a	chr6:82462214-82462230
44	RAD21	chr6:82461370-82464145	HCT-116	colon:	n/a	chr6:82463048-82463061 chr6:82463771-82463790 chr6:82462146-82462155
45	MAX	chr6:82461069-82464143	HepG2	liver:	n/a	chr6:82462514-82462524 chr6:82462658-82462668
46	CTCF	chr6:82463720-82463870	GM12872	blood:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
47	EGR1	chr6:82463483-82464016	MCF-7	breast:	n/a	chr6:82463732-82463743 chr6:82463727-82463749 chr6:82463731-82463744 chr6:82463774-82463787 chr6:82463775-82463785 chr6:82463774-82463784 chr6:82463731-82463744 chr6:82463734-82463743 chr6:82463733-82463743 chr6:82463731-82463744 chr6:82463732-82463746 chr6:82463774-82463787 chr6:82463730-82463745
48	CTCF	chr6:82463700-82463850	HRE	kidney:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
49	CTCF	chr6:82463740-82463890	WI-38	lung:	n/a	chr6:82463773-82463791 chr6:82463775-82463788 chr6:82463774-82463790
50	RFX5	chr6:82463628-82464066	HepG2	liver:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:82463776-82463826	AG09309	skin:	n/a
2	chr6:82463776-82463826	HRPEpiC	eye:	n/a
3	chr6:82463776-82463826	HMEC	breast:	n/a
4	chr6:82463776-82463826	GM12891	blood:	n/a
5	chr6:82463776-82463826	Hepatocyte	liver:	n/a
6	chr6:82463776-82463826	SK-N-MC	brain:	n/a
7	chr6:82463776-82463826	HL-60	blood:	n/a
8	chr6:82463776-82463826	Jurkat	blood:	n/a
9	chr6:82463776-82463826	IMR90	lung:	fetal
10	chr6:82463776-82463826	NH-A	brain:	n/a
11	chr6:82463776-82463826	ovcar-3	ovarian:	n/a
12	chr6:82463776-82463826	BJ	skin:	n/a
13	chr6:82463776-82463826	RPTEC	kidney:	n/a
14	chr6:82463776-82463826	GM12892	blood:	n/a
15	chr6:82463776-82463826	T-47D	breast:	n/a
16	chr6:82463776-82463826	SK-N-SH	brain:	n/a
17	chr6:82463776-82463826	HAEpiC	amniotic membrane:	n/a
18	chr6:82463776-82463826	MCF-7	breast:	n/a
19	chr6:82463776-82463826	AoSMC	blood vessel:	n/a
20	chr6:82463776-82463826	Hela-S3	cervix:	n/a
21	chr6:82463776-82463826	HEEpiC	esophagus:	n/a
22	chr6:82463776-82463826	HRE	kidney:	n/a
23	chr6:82463776-82463826	HCT-116	colon:	n/a
24	chr6:82463776-82463826	GM19239	blood:	n/a
25	chr6:82463776-82463826	SK-N-SH_RA	brain:	n/a
26	chr6:82463776-82463826	HPAEpiC	pulmonary alveolar:	n/a
27	chr6:82463776-82463826	NB4	blood:	n/a
28	chr6:82463776-82463826	NT2-D1	testis:	n/a
29	chr6:82463776-82463826	BE2_C	brain:	n/a
30	chr6:82463776-82463826	U87	brain:	n/a
31	chr6:82463776-82463826	NHBE	bronchial:	n/a
32	chr6:82463776-82463826	HUVEC	blood vessel:	n/a
33	chr6:82463776-82463826	HepG2	liver:	n/a
34	chr6:82463776-82463826	A549	lung:	n/a
35	chr6:82463776-82463826	ProgFib	skin:	n/a
36	chr6:82463776-82463826	CMK	blood:	n/a
37	chr6:82463776-82463826	GM12878	blood:	n/a
38	chr6:82463776-82463826	HCF	heart:	n/a
39	chr6:82463776-82463826	H1-hESC	embryonic stem cell:	embryo
40	chr6:82463776-82463826	PrEC	prostate:	n/a
41	chr6:82463776-82463826	PANC-1	pancreas:	n/a
42	chr6:82463776-82463826	AG09319	gingival:	n/a
43	chr6:82463776-82463826	AG04450	lung:	fetal
44	chr6:82463776-82463826	SKMC	muscle:	n/a
45	chr6:82463776-82463826	PFSK-1	brain:	n/a
46	chr6:82463776-82463826	SAEC	small airway:	n/a
47	chr6:82463776-82463826	HIPEpiC	eye:	n/a
48	chr6:82463776-82463826	HNPCEpiC	eye:	n/a
49	chr6:82463776-82463826	LNCaP	prostate:	n/a
50	chr6:82463776-82463826	HCPEpiC	choroid plexus:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:82442487..82447325-chr6:82460557..82464499,4	MCF-7	breast:
2	chr6:82460974..82462600-chr6:82462862..82465835,2	K562	blood:
3	chr6:82458586..82464036-chr6:82521971..82527096,10	MCF-7	breast:
4	chr17:27620993..27621956-chr6:82463473..82464035,2	NB4	blood:
5	chr6:81047941..81048548-chr6:82463318..82463845,3	K562	blood:
6	chr6:82462433..82465260-chr6:82471408..82474584,3	K562	blood:
7	chr6:81951603..81952598-chr6:82463481..82464052,2	MCF-7	breast:
8	chr6:81047724..81048347-chr6:82463313..82464141,2	MCF-7	breast:
9	chr6:82463264..82465756-chr6:82619549..82621138,2	K562	blood:
10	chr6:82460615..82464438-chr6:82472382..82478506,11	MCF-7	breast:

Variant related genes	Relation type
FAM46A	TF binding region
FAM46A	CpG island
ENSG00000224995	Chromatin interaction
ENSG00000232031	Chromatin interaction
ENSG00000108256	Chromatin interaction
ENSG00000112773	Chromatin interaction
ENSG00000219702	Chromatin interaction
ENSG00000206886	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10943830	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197381	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17661047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880360	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58539789	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911841	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769744	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82455200-82464000	Active TSS	Right Ventricle	heart
2	chr6:82456400-82464000	Active TSS	Right Atrium	heart
3	chr6:82458400-82464600	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr6:82458600-82463800	Active TSS	Stomach Smooth Muscle	stomach
5	chr6:82458800-82463800	Active TSS	Brain Anterior Caudate	brain
6	chr6:82458800-82463800	Active TSS	Colon Smooth Muscle	Colon
7	chr6:82459000-82464400	Active TSS	Stomach Mucosa	stomach
8	chr6:82459200-82464600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr6:82459400-82463800	Active TSS	Lung	lung
10	chr6:82459600-82463800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:82459600-82464000	Active TSS	Rectal Smooth Muscle	rectum
12	chr6:82459800-82463800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:82459800-82463800	Active TSS	Aorta	Aorta
14	chr6:82459800-82463800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:82459800-82463800	Active TSS	Brain Substantia Nigra	brain
16	chr6:82459800-82464000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
17	chr6:82459800-82464200	Active TSS	Placenta Amnion	Placenta Amnion
18	chr6:82459800-82464200	Active TSS	HSMM	muscle
19	chr6:82459800-82464200	Active TSS	NHLF	lung
20	chr6:82460000-82463800	Active TSS	Liver	Liver
21	chr6:82460000-82463800	Active TSS	Gastric	stomach
22	chr6:82460000-82463800	Active TSS	Ovary	ovary
23	chr6:82460000-82463800	Active TSS	Monocytes-CD14+_RO01746	blood
24	chr6:82460000-82463800	Active TSS	NHDF-Ad	bronchial
25	chr6:82460000-82463800	Active TSS	Osteobl	bone
26	chr6:82460000-82464000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:82460000-82464000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
28	chr6:82460000-82464000	Active TSS	Left Ventricle	heart
29	chr6:82460000-82464000	Active TSS	HSMMtube	muscle
30	chr6:82460200-82463800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:82460200-82463800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:82460200-82463800	Active TSS	Brain Cingulate Gyrus	brain
33	chr6:82460200-82463800	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr6:82460200-82463800	Active TSS	Fetal Intestine Large	intestine
35	chr6:82460200-82463800	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr6:82460200-82464000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:82460200-82464000	Active TSS	Psoas Muscle	Psoas
38	chr6:82460200-82464200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
39	chr6:82460200-82464200	Active TSS	Brain Angular Gyrus	brain
40	chr6:82460400-82463800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
41	chr6:82460400-82463800	Active TSS	Small Intestine	intestine
42	chr6:82460600-82463800	Active TSS	Hela-S3	cervix
43	chr6:82460800-82464200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
44	chr6:82461000-82463800	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr6:82461000-82463800	Active TSS	Spleen	Spleen
46	chr6:82461000-82464000	Active TSS	A549	lung
47	chr6:82461200-82463800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr6:82461200-82463800	Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr6:82461400-82463800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:82461400-82463800	Active TSS	Breast Myoepithelial Primary Cells	Breast

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