Variant report

Variant	rs11756089
Chromosome Location	chr6:35452346-35452347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:35452261-35452506	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:35452293-35452381	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr6:35451668-35455064	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAZ	chr6:35452338-35454028	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35450192..35452649-chr6:35708283..35711232,2	MCF-7	breast:

Variant related genes	Relation type
TEAD3	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1076655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11758353	0.94[ASN][1000 genomes]
rs2072887	0.89[ASN][1000 genomes]
rs2076171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2273002	0.90[JPT][hapmap]
rs3800379	0.85[ASN][1000 genomes]
rs41270066	0.97[ASN][1000 genomes]
rs41270070	0.97[ASN][1000 genomes]
rs45454199	0.94[ASN][1000 genomes]
rs45464000	0.97[ASN][1000 genomes]
rs45472598	0.94[ASN][1000 genomes]
rs45624039	0.94[ASN][1000 genomes]
rs4711417	0.94[ASN][1000 genomes]
rs4713863	0.85[ASN][1000 genomes]
rs4713866	0.83[ASN][1000 genomes]
rs4713870	0.94[ASN][1000 genomes]
rs4713871	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4713872	0.91[ASN][1000 genomes]
rs4713880	0.90[JPT][hapmap]
rs4713901	0.86[JPT][hapmap]
rs6935950	1.00[CHB][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
2	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
5	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35438000-35455800	Weak transcription	Brain Angular Gyrus	brain
2	chr6:35438200-35458000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:35439200-35452400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:35439200-35452600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:35439200-35453000	Weak transcription	Fetal Kidney	kidney
6	chr6:35439400-35452600	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr6:35439800-35452600	Strong transcription	Fetal Intestine Small	intestine
8	chr6:35440000-35452400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:35440200-35452400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:35440200-35457200	Weak transcription	Psoas Muscle	Psoas
11	chr6:35440400-35452400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:35440400-35452400	Weak transcription	Hela-S3	cervix
13	chr6:35440400-35452600	Strong transcription	NHLF	lung
14	chr6:35440400-35452800	Strong transcription	Fetal Stomach	stomach
15	chr6:35440400-35453000	Strong transcription	Fetal Intestine Large	intestine
16	chr6:35440400-35455600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:35440600-35455800	Weak transcription	Primary B cells from cord blood	blood
18	chr6:35440800-35452600	Weak transcription	NHDF-Ad	bronchial
19	chr6:35441200-35452600	Weak transcription	A549	lung
20	chr6:35441400-35452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:35441400-35452400	Weak transcription	HMEC	breast
22	chr6:35441400-35452800	Weak transcription	HUVEC	blood vessel
23	chr6:35441800-35458200	Weak transcription	Brain Substantia Nigra	brain
24	chr6:35442800-35452800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:35443200-35458000	Weak transcription	Brain Anterior Caudate	brain
26	chr6:35443600-35462000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:35443800-35452800	Weak transcription	Small Intestine	intestine
28	chr6:35443800-35455600	Weak transcription	Fetal Brain Female	brain
29	chr6:35444200-35452800	Weak transcription	Stomach Mucosa	stomach
30	chr6:35444200-35455800	Weak transcription	Thymus	Thymus
31	chr6:35444200-35457800	Weak transcription	Brain Germinal Matrix	brain
32	chr6:35444800-35452400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:35445800-35452400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:35445800-35454200	Strong transcription	HepG2	liver
35	chr6:35446000-35452600	Strong transcription	Duodenum Mucosa	Duodenum
36	chr6:35446400-35452600	Weak transcription	Pancreas	Pancrea
37	chr6:35446400-35453000	Weak transcription	Spleen	Spleen
38	chr6:35446600-35452600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:35447200-35452600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:35447400-35452600	Weak transcription	Adipose Nuclei	Adipose
41	chr6:35447600-35452600	Weak transcription	HSMMtube	muscle
42	chr6:35448200-35452600	Weak transcription	Right Ventricle	heart
43	chr6:35448200-35453000	Weak transcription	Ovary	ovary
44	chr6:35448400-35452600	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr6:35449000-35452600	Weak transcription	NHEK	skin
46	chr6:35449200-35452600	Weak transcription	Right Atrium	heart
47	chr6:35449200-35452800	Weak transcription	Aorta	Aorta
48	chr6:35449400-35452600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr6:35449400-35453000	Weak transcription	Left Ventricle	heart
50	chr6:35449600-35452600	Weak transcription	Liver	Liver

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