Variant report

Variant	rs6935950
Chromosome Location	chr6:35413626-35413627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35413046..35416291-chr6:35417429..35420462,4	K562	blood:
2	chr6:35412651..35414194-chr6:35442637..35444257,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1076655	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11756089	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11758353	0.84[ASN][1000 genomes]
rs2076171	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2187903	1.00[GIH][hapmap]
rs3800379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270066	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs41270070	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45454199	0.84[ASN][1000 genomes]
rs45464000	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs45472598	0.84[ASN][1000 genomes]
rs45484291	1.00[EUR][1000 genomes]
rs45532932	1.00[EUR][1000 genomes]
rs45614138	1.00[EUR][1000 genomes]
rs45624039	0.84[ASN][1000 genomes]
rs4711417	0.84[ASN][1000 genomes]
rs4713863	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713870	0.84[ASN][1000 genomes]
rs4713871	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs4713872	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6915115	1.00[CEU][hapmap]
rs6936165	1.00[EUR][1000 genomes]
rs743965	1.00[GIH][hapmap]
rs7739161	1.00[CEU][hapmap]
rs9658089	1.00[CEU][hapmap]
rs9658108	1.00[CEU][hapmap]
rs9658118	1.00[CEU][hapmap]
rs9658135	1.00[GIH][hapmap]
rs9658136	1.00[CEU][hapmap]
rs9942465	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
5	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
6	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
7	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
8	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35400600-35413800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:35403400-35419400	Weak transcription	Right Atrium	heart
3	chr6:35404800-35413800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:35406800-35419200	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:35411200-35419600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:35411400-35415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:35411400-35419400	Weak transcription	NHEK	skin
8	chr6:35411600-35419400	Weak transcription	HMEC	breast
9	chr6:35411800-35419200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:35412800-35414000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:35413200-35413800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:35413400-35413800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:35413400-35414000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
14	chr6:35413400-35414000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:35413400-35414000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr6:35413400-35414000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:35413400-35414000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr6:35413400-35414200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr6:35413400-35414200	Enhancers	Placenta	Placenta
20	chr6:35413600-35414000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:35413600-35414000	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr6:35413600-35414000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:35413600-35414000	Enhancers	Esophagus	oesophagus
24	chr6:35413600-35414200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:35413600-35414200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:35413600-35414200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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