Variant report

Variant	rs9658135
Chromosome Location	chr6:35378997-35378998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35376688..35379327-chr6:35465068..35467470,3	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11545923	1.00[CHD][hapmap]
rs16868695	1.00[CHD][hapmap]
rs16873902	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874216	1.00[CHD][hapmap]
rs16876572	1.00[CHD][hapmap]
rs16878591	1.00[CHD][hapmap];1.00[TSI][hapmap]
rs16878806	1.00[CHD][hapmap];1.00[TSI][hapmap]
rs17511800	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2187903	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs34278260	1.00[AMR][1000 genomes]
rs41270062	1.00[AMR][1000 genomes]
rs56809926	1.00[AMR][1000 genomes]
rs57229653	1.00[AMR][1000 genomes]
rs61734578	1.00[AMR][1000 genomes]
rs6457815	1.00[CHD][hapmap]
rs6901580	1.00[CEU][hapmap]
rs6935950	1.00[GIH][hapmap]
rs6938138	1.00[CHD][hapmap]
rs73405795	1.00[AMR][1000 genomes]
rs73405799	1.00[AMR][1000 genomes]
rs73407650	1.00[AMR][1000 genomes]
rs73407675	1.00[AMR][1000 genomes]
rs73409769	1.00[AMR][1000 genomes]
rs73409778	1.00[AMR][1000 genomes]
rs73409793	1.00[AMR][1000 genomes]
rs73411706	1.00[AMR][1000 genomes]
rs73411720	1.00[AMR][1000 genomes]
rs73411726	1.00[AMR][1000 genomes]
rs73411781	1.00[AMR][1000 genomes]
rs73411797	1.00[AMR][1000 genomes]
rs743965	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs7751726	1.00[CHD][hapmap]
rs7770619	1.00[CHD][hapmap]
rs7771323	1.00[CEU][hapmap]
rs9462064	1.00[CEU][hapmap]
rs9658079	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658085	1.00[CHD][hapmap]
rs9658129	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658149	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9942465	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
8	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
9	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
10	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35360000-35379000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:35360000-35382600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:35361800-35385800	Weak transcription	Small Intestine	intestine
4	chr6:35362200-35380000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:35366200-35386800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:35366400-35382800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:35369200-35379000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:35369200-35382600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:35369400-35382600	Weak transcription	NH-A	brain
10	chr6:35370600-35393200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:35371000-35382400	Weak transcription	Right Atrium	heart
12	chr6:35371200-35382400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:35371200-35382400	Weak transcription	Stomach Mucosa	stomach
14	chr6:35371200-35383200	Weak transcription	Fetal Kidney	kidney
15	chr6:35372000-35382400	Weak transcription	Fetal Heart	heart
16	chr6:35373200-35381400	Weak transcription	Fetal Brain Male	brain
17	chr6:35373400-35382400	Weak transcription	Brain Germinal Matrix	brain
18	chr6:35374000-35380400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:35375200-35382600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:35375600-35387000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr6:35376000-35380000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:35376400-35379000	Weak transcription	HMEC	breast
23	chr6:35376400-35379000	Weak transcription	HSMM	muscle
24	chr6:35376400-35379000	Strong transcription	NHEK	skin
25	chr6:35376400-35379200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:35377000-35379000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:35377400-35379000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:35377400-35379000	Weak transcription	Fetal Brain Female	brain
29	chr6:35377400-35379200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:35377400-35379200	Weak transcription	Fetal Lung	lung
31	chr6:35377600-35379200	Genic enhancers	Placenta	Placenta
32	chr6:35377600-35380200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:35377600-35381200	Strong transcription	Liver	Liver
34	chr6:35377600-35382400	Strong transcription	Fetal Muscle Leg	muscle
35	chr6:35377600-35382400	Strong transcription	Osteobl	bone
36	chr6:35377600-35386000	Weak transcription	HUVEC	blood vessel
37	chr6:35377800-35385600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr6:35377800-35395000	Weak transcription	K562	blood
39	chr6:35378000-35379200	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr6:35378000-35379600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr6:35378000-35380000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
42	chr6:35378000-35380400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:35378000-35381200	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr6:35378000-35381200	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:35378000-35381400	Strong transcription	Gastric	stomach
46	chr6:35378000-35381400	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr6:35378000-35381800	Strong transcription	Stomach Smooth Muscle	stomach
48	chr6:35378000-35382400	Strong transcription	Fetal Stomach	stomach
49	chr6:35378000-35382600	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:35378000-35386400	Strong transcription	Spleen	Spleen

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