Variant report

Variant	rs9658079
Chromosome Location	chr6:35327577-35327578
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35322565..35326076-chr6:35326260..35332051,7	K562	blood:
2	chr6:35327410..35329043-chr6:35371700..35373772,2	MCF-7	breast:
3	chr6:35315105..35319537-chr6:35325978..35330834,4	K562	blood:
4	chr6:35313773..35316682-chr6:35327162..35330055,2	MCF-7	breast:
5	chr6:35322565..35324918-chr6:35326260..35328073,2	K562	blood:
6	chr6:35319034..35321264-chr6:35325609..35328038,2	MCF-7	breast:
7	chr6:35327015..35329027-chr6:35357004..35359462,2	K562	blood:
8	chr6:35319334..35322299-chr6:35325979..35329998,4	MCF-7	breast:
9	chr6:35327509..35329101-chr6:35368128..35370568,2	K562	blood:

No data

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs16868695	1.00[CHD][hapmap]
rs16873902	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874216	1.00[CHD][hapmap]
rs16876572	1.00[CHD][hapmap]
rs17511800	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2187903	1.00[CEU][hapmap]
rs34278260	1.00[AMR][1000 genomes]
rs41270062	1.00[AMR][1000 genomes]
rs56809926	1.00[AMR][1000 genomes]
rs57229653	1.00[AMR][1000 genomes]
rs61734578	1.00[AMR][1000 genomes]
rs6457815	1.00[CHD][hapmap]
rs6901580	1.00[CEU][hapmap]
rs6938138	1.00[CHD][hapmap]
rs73405759	1.00[AMR][1000 genomes]
rs73405768	1.00[AMR][1000 genomes]
rs73405774	1.00[AMR][1000 genomes]
rs73405795	1.00[AMR][1000 genomes]
rs73405799	1.00[AMR][1000 genomes]
rs73407650	1.00[AMR][1000 genomes]
rs73407675	1.00[AMR][1000 genomes]
rs73409769	1.00[AMR][1000 genomes]
rs73409778	1.00[AMR][1000 genomes]
rs73409793	1.00[AMR][1000 genomes]
rs73411706	1.00[AMR][1000 genomes]
rs73411720	1.00[AMR][1000 genomes]
rs73411726	1.00[AMR][1000 genomes]
rs73411781	1.00[AMR][1000 genomes]
rs73411797	1.00[AMR][1000 genomes]
rs743965	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs7751726	1.00[CHD][hapmap]
rs7770619	1.00[CHD][hapmap]
rs7771323	1.00[CEU][hapmap]
rs9462064	1.00[CEU][hapmap]
rs9658085	1.00[CHD][hapmap]
rs9658129	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658132	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658135	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658149	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9942465	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv885798	chr6:35318784-35329406	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311600-35327600	Weak transcription	A549	lung
2	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
3	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
4	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
5	chr6:35316000-35328600	Strong transcription	Duodenum Mucosa	Duodenum
6	chr6:35316800-35330000	Strong transcription	Fetal Intestine Small	intestine
7	chr6:35317400-35333000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:35319200-35329000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:35319600-35327600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:35321000-35342400	Weak transcription	Fetal Kidney	kidney
11	chr6:35321400-35330400	Weak transcription	Colonic Mucosa	Colon
12	chr6:35321600-35327600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:35321600-35328000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:35322000-35336000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:35322200-35331600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:35323800-35329200	Enhancers	Brain Angular Gyrus	brain
17	chr6:35323800-35331600	Enhancers	Psoas Muscle	Psoas
18	chr6:35324000-35328000	Enhancers	Right Atrium	heart
19	chr6:35324400-35327800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:35324400-35328000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:35324400-35328800	Enhancers	Brain Substantia Nigra	brain
22	chr6:35324600-35327600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:35324800-35327800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:35324800-35327800	Genic enhancers	Fetal Muscle Leg	muscle
25	chr6:35324800-35329200	Enhancers	Ovary	ovary
26	chr6:35324800-35331400	Enhancers	Brain Hippocampus Middle	brain
27	chr6:35325000-35327600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:35325000-35328200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:35325000-35329600	Enhancers	Brain Cingulate Gyrus	brain
30	chr6:35325000-35330200	Weak transcription	GM12878-XiMat	blood
31	chr6:35325000-35330600	Weak transcription	HUVEC	blood vessel
32	chr6:35325000-35331000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:35325000-35331400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:35325000-35331600	Enhancers	Left Ventricle	heart
35	chr6:35325200-35327600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:35325200-35327600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:35325200-35327800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:35325200-35328000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:35325200-35328000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:35325200-35328200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr6:35325200-35328200	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr6:35325200-35328600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:35325200-35328600	Enhancers	Stomach Smooth Muscle	stomach
44	chr6:35325200-35328800	Weak transcription	Brain Germinal Matrix	brain
45	chr6:35325200-35329000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:35325200-35329400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:35325200-35329400	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr6:35325200-35330200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:35325200-35335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:35325400-35327600	Weak transcription	Esophagus	oesophagus

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