Variant report

Variant	rs16874216
Chromosome Location	chr6:35263241-35263242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:35263100-35263250	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35257372..35267692-chr6:35433856..35438688,25	K562	blood:
2	chr6:35260730..35269335-chr6:35433870..35444063,22	MCF-7	breast:
3	chr6:35261657..35264844-chr6:35438190..35440165,4	MCF-7	breast:
4	chr6:35261055..35266113-chr6:35308586..35312212,6	K562	blood:
5	chr6:35262981..35267829-chr6:35418945..35424124,7	K562	blood:
6	chr6:35257372..35267871-chr6:35433266..35439192,25	K562	blood:
7	chr6:35227214..35229292-chr6:35260435..35263392,2	K562	blood:
8	chr6:35232808..35235084-chr6:35262223..35264911,2	K562	blood:
9	chr6:35260793..35263953-chr6:35263989..35266366,4	K562	blood:

No data

Variant related genes	Relation type
DEF6	TF binding region
ENSG00000023892	Chromatin interaction
ENSG00000112033	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1034450	1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs1077822	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs12110520	1.00[ASN][1000 genomes]
rs12110664	1.00[ASN][1000 genomes]
rs12111424	1.00[ASN][1000 genomes]
rs16868695	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868699	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16872293	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16873902	1.00[CHD][hapmap]
rs16874062	1.00[MEX][hapmap]
rs16876572	1.00[CHD][hapmap]
rs17511800	1.00[CHD][hapmap]
rs2004	1.00[ASN][1000 genomes]
rs2187903	0.91[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2228265	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs2894400	1.00[ASN][1000 genomes]
rs34278260	1.00[ASN][1000 genomes]
rs34474204	0.80[EUR][1000 genomes]
rs41270046	1.00[ASN][1000 genomes]
rs41270062	1.00[ASN][1000 genomes]
rs45482297	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56809926	1.00[ASN][1000 genomes]
rs57229653	1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57794912	1.00[ASN][1000 genomes]
rs57856268	1.00[ASN][1000 genomes]
rs58796597	1.00[ASN][1000 genomes]
rs59654131	0.80[EUR][1000 genomes]
rs59757151	1.00[ASN][1000 genomes]
rs59895076	1.00[ASN][1000 genomes]
rs60086237	1.00[ASN][1000 genomes]
rs60113507	1.00[ASN][1000 genomes]
rs60569490	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61280851	0.80[EUR][1000 genomes]
rs61592141	1.00[ASN][1000 genomes]
rs61734578	1.00[ASN][1000 genomes]
rs6457815	1.00[CHD][hapmap]
rs6457817	1.00[ASN][1000 genomes]
rs6900879	1.00[ASN][1000 genomes]
rs6901580	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6923025	1.00[ASN][1000 genomes]
rs6934083	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938138	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939017	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	1.00[ASN][1000 genomes]
rs73405709	1.00[ASN][1000 genomes]
rs73405725	1.00[ASN][1000 genomes]
rs73405759	1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	1.00[ASN][1000 genomes]
rs73405774	1.00[ASN][1000 genomes]
rs73405795	1.00[ASN][1000 genomes]
rs73405799	1.00[ASN][1000 genomes]
rs73407610	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407613	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407619	1.00[ASN][1000 genomes]
rs73407641	1.00[ASN][1000 genomes]
rs73407650	1.00[ASN][1000 genomes]
rs73407675	1.00[ASN][1000 genomes]
rs73407681	0.91[AMR][1000 genomes]
rs73409710	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409758	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409765	1.00[ASN][1000 genomes]
rs73409769	1.00[ASN][1000 genomes]
rs73409774	1.00[ASN][1000 genomes]
rs73409778	1.00[ASN][1000 genomes]
rs73409793	1.00[ASN][1000 genomes]
rs73411706	1.00[ASN][1000 genomes]
rs73411720	1.00[ASN][1000 genomes]
rs73411726	1.00[ASN][1000 genomes]
rs73411797	1.00[ASN][1000 genomes]
rs73746425	1.00[ASN][1000 genomes]
rs73746430	1.00[ASN][1000 genomes]
rs743965	0.91[ASW][hapmap];1.00[CHD][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7744392	1.00[GIH][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs7751726	1.00[CHD][hapmap]
rs7758272	1.00[GIH][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs7770619	1.00[CHD][hapmap]
rs7771323	0.84[EUR][1000 genomes]
rs7773319	1.00[ASN][1000 genomes]
rs820102	1.00[ASN][1000 genomes]
rs9462062	1.00[ASN][1000 genomes]
rs9462064	1.00[ASN][1000 genomes]
rs9469960	1.00[ASN][1000 genomes]
rs9469967	1.00[ASN][1000 genomes]
rs9658061	0.80[EUR][1000 genomes]
rs9658079	1.00[CHD][hapmap]
rs9658080	1.00[GIH][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs9658085	1.00[CHD][hapmap]
rs9658127	1.00[ASN][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9658135	1.00[CHD][hapmap]
rs9658149	1.00[CHD][hapmap]
rs9942465	1.00[CHD][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
2	chr6:35237800-35264800	Weak transcription	K562	blood
3	chr6:35243400-35265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:35247800-35264600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:35248000-35264800	Strong transcription	Stomach Smooth Muscle	stomach
6	chr6:35248400-35263400	Strong transcription	Rectal Smooth Muscle	rectum
7	chr6:35248400-35264400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:35248600-35264200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:35248600-35264200	Strong transcription	Fetal Thymus	thymus
10	chr6:35248600-35264400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr6:35248800-35263600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:35248800-35263600	Strong transcription	Duodenum Mucosa	Duodenum
13	chr6:35248800-35263800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:35248800-35264000	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:35248800-35264000	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:35248800-35264000	Strong transcription	Dnd41	blood
17	chr6:35248800-35264200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:35248800-35264400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:35248800-35264400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:35248800-35264400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:35248800-35264400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:35248800-35264600	Strong transcription	Primary T cells from cord blood	blood
23	chr6:35248800-35264600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:35248800-35264800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:35248800-35264800	Strong transcription	Thymus	Thymus
26	chr6:35248800-35265000	Strong transcription	Fetal Intestine Small	intestine
27	chr6:35248800-35265000	Strong transcription	Fetal Stomach	stomach
28	chr6:35248800-35265400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:35248800-35265800	Strong transcription	Brain Inferior Temporal Lobe	brain
30	chr6:35249000-35263400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:35249000-35264200	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr6:35249000-35264600	Strong transcription	Brain Anterior Caudate	brain
33	chr6:35249000-35264600	Strong transcription	Brain Cingulate Gyrus	brain
34	chr6:35249000-35264600	Strong transcription	Fetal Intestine Large	intestine
35	chr6:35249000-35265000	Strong transcription	Liver	Liver
36	chr6:35249000-35265200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:35249000-35265200	Strong transcription	Osteobl	bone
38	chr6:35249000-35265400	Weak transcription	Right Atrium	heart
39	chr6:35249000-35266800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:35249200-35264400	Strong transcription	Placenta	Placenta
41	chr6:35249200-35265400	Strong transcription	Fetal Brain Female	brain
42	chr6:35249400-35263600	Strong transcription	Aorta	Aorta
43	chr6:35250000-35263400	Strong transcription	Brain Angular Gyrus	brain
44	chr6:35250000-35263600	Strong transcription	GM12878-XiMat	blood
45	chr6:35251000-35264400	Strong transcription	Adipose Nuclei	Adipose
46	chr6:35251000-35266800	Weak transcription	Fetal Brain Male	brain
47	chr6:35251400-35265000	Weak transcription	HUVEC	blood vessel
48	chr6:35251600-35263400	Strong transcription	Left Ventricle	heart
49	chr6:35251800-35263400	Weak transcription	Psoas Muscle	Psoas
50	chr6:35252600-35263600	Strong transcription	Right Ventricle	heart

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