Variant report

Variant	rs9469967
Chromosome Location	chr6:35205426-35205427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35195154..35200305-chr6:35202213..35207133,5	K562	blood:
2	chr6:35203567..35205850-chr6:35210606..35213440,2	MCF-7	breast:
3	chr6:35173439..35175719-chr6:35204862..35206490,2	K562	blood:
4	chr6:34760038..34762450-chr6:35204039..35206411,2	K562	blood:
5	chr6:35196327..35198090-chr6:35203601..35206096,2	MCF-7	breast:
6	chr6:35202209..35206634-chr6:35208195..35211678,7	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1034450	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs12110520	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110664	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111424	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868695	1.00[ASN][1000 genomes]
rs16868699	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16872293	1.00[ASN][1000 genomes]
rs16874062	0.81[AMR][1000 genomes]
rs16874216	1.00[ASN][1000 genomes]
rs16874262	0.81[AMR][1000 genomes]
rs2004	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187903	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2228265	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627111	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2894400	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34278260	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35455943	0.88[EUR][1000 genomes]
rs41270046	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270062	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs56809926	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229653	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57794912	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57976333	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58796597	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58850273	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59757151	1.00[ASN][1000 genomes]
rs59895076	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60086237	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60113507	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60569490	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61592141	1.00[ASN][1000 genomes]
rs61734578	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457817	1.00[ASN][1000 genomes]
rs6900879	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901580	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906117	0.81[AMR][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6923025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73403830	1.00[ASN][1000 genomes]
rs73403834	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403837	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403843	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405709	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405725	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405759	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405774	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405795	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405799	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407641	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407650	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409769	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409774	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409778	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409793	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411706	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411720	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411726	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411781	0.81[EUR][1000 genomes]
rs73411797	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73746425	1.00[ASN][1000 genomes]
rs743965	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773319	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820102	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462064	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462066	0.81[AMR][1000 genomes]
rs9469960	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469965	0.81[AMR][1000 genomes]
rs9469966	0.81[AMR][1000 genomes]
rs9469969	0.87[AMR][1000 genomes]
rs9469977	0.81[AMR][1000 genomes]
rs9469984	0.81[AMR][1000 genomes]
rs9658127	1.00[ASN][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9942465	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35182400-35209000	Weak transcription	A549	lung
2	chr6:35184800-35205600	Weak transcription	Fetal Brain Female	brain
3	chr6:35186400-35212000	Weak transcription	NHDF-Ad	bronchial
4	chr6:35186800-35212000	Weak transcription	Dnd41	blood
5	chr6:35188200-35205800	Weak transcription	Fetal Kidney	kidney
6	chr6:35188200-35206400	Weak transcription	NH-A	brain
7	chr6:35189600-35205800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:35190000-35205600	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:35190200-35212000	Weak transcription	Brain Angular Gyrus	brain
10	chr6:35191200-35212000	Weak transcription	Primary T cells from cord blood	blood
11	chr6:35191400-35226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:35192200-35211400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:35194000-35209400	Weak transcription	Thymus	Thymus
14	chr6:35194000-35225600	Weak transcription	Primary B cells from cord blood	blood
15	chr6:35195600-35210600	Weak transcription	Spleen	Spleen
16	chr6:35197000-35205600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:35199200-35211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:35199200-35212200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:35199400-35208800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:35199400-35209200	Weak transcription	Adipose Nuclei	Adipose
21	chr6:35199400-35211800	Weak transcription	Brain Hippocampus Middle	brain
22	chr6:35199400-35212000	Weak transcription	Brain Anterior Caudate	brain
23	chr6:35199400-35216200	Weak transcription	Brain Substantia Nigra	brain
24	chr6:35199600-35209800	Weak transcription	Gastric	stomach
25	chr6:35199600-35210400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:35199600-35211200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:35199600-35215600	Weak transcription	Hela-S3	cervix
28	chr6:35199600-35226600	Weak transcription	Esophagus	oesophagus
29	chr6:35199800-35205600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:35199800-35205600	Weak transcription	Right Atrium	heart
31	chr6:35199800-35205600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:35199800-35206200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:35199800-35206800	Weak transcription	Ovary	ovary
34	chr6:35199800-35212200	Weak transcription	HepG2	liver
35	chr6:35199800-35226200	Weak transcription	Pancreas	Pancrea
36	chr6:35200000-35206000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:35200400-35205600	Strong transcription	Osteobl	bone
38	chr6:35200600-35225000	Weak transcription	Fetal Brain Male	brain
39	chr6:35201200-35205800	Strong transcription	Aorta	Aorta
40	chr6:35201400-35226200	Weak transcription	Stomach Mucosa	stomach
41	chr6:35201600-35211800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr6:35202600-35206200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:35202600-35225800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr6:35203000-35205600	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:35203400-35206000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:35203400-35226000	Weak transcription	HSMMtube	muscle
47	chr6:35203600-35210600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:35204000-35207000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:35204000-35208400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
50	chr6:35204000-35209000	Enhancers	Left Ventricle	heart

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