Variant report

Variant	rs16868695
Chromosome Location	chr6:35214884-35214885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35165480..35167314-chr6:35214430..35217292,2	MCF-7	breast:
2	chr6:35213830..35215728-chr6:35248385..35249951,2	K562	blood:
3	chr6:35214367..35216287-chr6:35225252..35228321,3	K562	blood:
4	chr6:35209581..35211812-chr6:35214275..35216515,3	K562	blood:

Variant related genes	Relation type
ENSG00000065029	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1034450	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs12110520	1.00[ASN][1000 genomes]
rs12110664	1.00[ASN][1000 genomes]
rs12111424	1.00[ASN][1000 genomes]
rs16868699	1.00[CEU][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868709	0.86[ASW][hapmap]
rs16872293	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs16873902	1.00[CHD][hapmap]
rs16874062	1.00[MEX][hapmap]
rs16874216	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17511800	1.00[CHD][hapmap]
rs2004	1.00[ASN][1000 genomes]
rs2187903	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2228265	1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs2894400	1.00[ASN][1000 genomes]
rs34278260	1.00[ASN][1000 genomes]
rs41270046	1.00[ASN][1000 genomes]
rs41270062	1.00[ASN][1000 genomes]
rs45482297	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56809926	1.00[ASN][1000 genomes]
rs57229653	1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57794912	1.00[ASN][1000 genomes]
rs57976333	1.00[ASN][1000 genomes]
rs58796597	1.00[ASN][1000 genomes]
rs58850273	1.00[ASN][1000 genomes]
rs59757151	1.00[ASN][1000 genomes]
rs59895076	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60086237	1.00[ASN][1000 genomes]
rs60113507	1.00[ASN][1000 genomes]
rs60569490	1.00[ASN][1000 genomes]
rs61592141	1.00[ASN][1000 genomes]
rs61734578	1.00[ASN][1000 genomes]
rs6457815	1.00[CHD][hapmap]
rs6457817	1.00[ASN][1000 genomes]
rs6900879	1.00[ASN][1000 genomes]
rs6901580	1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6923025	1.00[ASN][1000 genomes]
rs6934083	1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938138	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73403830	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403834	1.00[ASN][1000 genomes]
rs73403837	1.00[ASN][1000 genomes]
rs73403843	1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	1.00[ASN][1000 genomes]
rs73405709	1.00[ASN][1000 genomes]
rs73405725	1.00[ASN][1000 genomes]
rs73405759	1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	1.00[ASN][1000 genomes]
rs73405774	1.00[ASN][1000 genomes]
rs73405795	1.00[ASN][1000 genomes]
rs73405799	1.00[ASN][1000 genomes]
rs73407610	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407613	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407619	1.00[ASN][1000 genomes]
rs73407641	1.00[ASN][1000 genomes]
rs73407650	1.00[ASN][1000 genomes]
rs73407675	1.00[ASN][1000 genomes]
rs73407681	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73409710	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409758	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409765	1.00[ASN][1000 genomes]
rs73409769	1.00[ASN][1000 genomes]
rs73409774	1.00[ASN][1000 genomes]
rs73409778	1.00[ASN][1000 genomes]
rs73409793	1.00[ASN][1000 genomes]
rs73411706	1.00[ASN][1000 genomes]
rs73411720	1.00[ASN][1000 genomes]
rs73411726	1.00[ASN][1000 genomes]
rs73411797	1.00[ASN][1000 genomes]
rs73746425	1.00[ASN][1000 genomes]
rs73746430	1.00[ASN][1000 genomes]
rs743965	1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs7744392	1.00[GIH][hapmap];0.88[TSI][hapmap]
rs7751726	1.00[CHD][hapmap]
rs7758272	1.00[GIH][hapmap];0.88[TSI][hapmap]
rs7770619	1.00[CHD][hapmap]
rs7773319	1.00[ASN][1000 genomes]
rs820102	1.00[ASN][1000 genomes]
rs9462062	1.00[ASN][1000 genomes]
rs9462064	1.00[ASN][1000 genomes]
rs9469960	1.00[ASN][1000 genomes]
rs9469967	1.00[ASN][1000 genomes]
rs9470004	0.86[ASW][hapmap]
rs9470011	0.86[ASW][hapmap]
rs9658079	1.00[CHD][hapmap]
rs9658080	1.00[GIH][hapmap];0.88[TSI][hapmap]
rs9658085	1.00[CHD][hapmap]
rs9658127	1.00[ASN][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9658135	1.00[CHD][hapmap]
rs9658149	1.00[CHD][hapmap]
rs9942465	1.00[CHD][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35191400-35226000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:35194000-35225600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:35199400-35216200	Weak transcription	Brain Substantia Nigra	brain
4	chr6:35199600-35215600	Weak transcription	Hela-S3	cervix
5	chr6:35199600-35226600	Weak transcription	Esophagus	oesophagus
6	chr6:35199800-35226200	Weak transcription	Pancreas	Pancrea
7	chr6:35200600-35225000	Weak transcription	Fetal Brain Male	brain
8	chr6:35201400-35226200	Weak transcription	Stomach Mucosa	stomach
9	chr6:35202600-35225800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:35203400-35226000	Weak transcription	HSMMtube	muscle
11	chr6:35204400-35215400	Weak transcription	GM12878-XiMat	blood
12	chr6:35205600-35226000	Weak transcription	HSMM	muscle
13	chr6:35206000-35215400	Weak transcription	K562	blood
14	chr6:35206600-35215600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:35206800-35216000	Strong transcription	Osteobl	bone
16	chr6:35207000-35215800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:35207400-35226200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:35207800-35224000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:35208000-35215800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:35208000-35216000	Weak transcription	HUVEC	blood vessel
21	chr6:35208200-35226000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:35208400-35226000	Weak transcription	NHEK	skin
23	chr6:35208600-35220200	Strong transcription	Fetal Stomach	stomach
24	chr6:35209000-35216800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:35209000-35217400	Weak transcription	Colonic Mucosa	Colon
26	chr6:35209200-35216400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:35209400-35216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:35209400-35216200	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:35209600-35216200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:35209600-35216400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr6:35209600-35216800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:35209800-35216600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:35209800-35220000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:35209800-35226400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:35210000-35217000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:35210200-35215600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:35210400-35219000	Weak transcription	Placenta	Placenta
38	chr6:35210600-35215600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:35210600-35225400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:35211000-35226000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:35212000-35216800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr6:35212200-35215000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:35212400-35226000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr6:35212800-35216000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:35213000-35215600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr6:35213000-35215600	Weak transcription	Fetal Heart	heart
47	chr6:35213200-35216000	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:35213200-35226200	Weak transcription	Gastric	stomach
49	chr6:35213400-35215600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr6:35213400-35216200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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