Variant report

Variant	rs73405709
Chromosome Location	chr6:35076325-35076326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1034450	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868695	1.00[ASN][1000 genomes]
rs16868699	1.00[ASN][1000 genomes]
rs16872293	1.00[ASN][1000 genomes]
rs16874216	1.00[ASN][1000 genomes]
rs2004	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187903	1.00[ASN][1000 genomes]
rs2228265	1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs2894400	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34278260	1.00[ASN][1000 genomes]
rs34644591	1.00[ASN][1000 genomes]
rs35455943	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41270046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270048	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41270062	1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs56809926	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229653	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57794912	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57976333	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58796597	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58850273	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59895076	1.00[ASN][1000 genomes]
rs60086237	1.00[ASN][1000 genomes]
rs60113507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60569490	1.00[ASN][1000 genomes]
rs61734578	1.00[ASN][1000 genomes]
rs6900879	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901580	1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923025	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73403830	1.00[ASN][1000 genomes]
rs73403834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405759	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405774	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405795	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405799	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407641	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407650	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407675	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	1.00[ASN][1000 genomes]
rs73409769	1.00[ASN][1000 genomes]
rs73409774	1.00[ASN][1000 genomes]
rs73409778	1.00[ASN][1000 genomes]
rs73409793	1.00[ASN][1000 genomes]
rs73411706	1.00[ASN][1000 genomes]
rs73411720	1.00[ASN][1000 genomes]
rs73411726	1.00[ASN][1000 genomes]
rs743965	1.00[ASN][1000 genomes]
rs7773319	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820102	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462064	1.00[ASN][1000 genomes]
rs9469960	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469967	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869750	chr6:35031548-35085585	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35075200-35076400	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:35076000-35076400	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr6:35076200-35076400	Enhancers	Rectal Mucosa Donor 29	rectum

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