The 2.0 version of rSNPBase

Variant report

Variant rs28627111
Chromosome Location chr6:35234015-35234016
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:35228200-35234400 Weak transcription Lung lung
2 chr6:35228200-35235000 Weak transcription Ovary ovary
3 chr6:35228200-35243000 Weak transcription Aorta Aorta
4 chr6:35228400-35236000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr6:35228400-35247800 Weak transcription Fetal Muscle Trunk muscle
6 chr6:35228400-35248000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr6:35228400-35250200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr6:35228600-35235000 Weak transcription Fetal Thymus thymus
9 chr6:35228600-35237400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr6:35228600-35238000 Weak transcription Fetal Stomach stomach
11 chr6:35228600-35242000 Weak transcription HSMMtube muscle
12 chr6:35228600-35243000 Weak transcription HSMM muscle
13 chr6:35228600-35243000 Weak transcription NH-A brain
14 chr6:35228600-35248400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr6:35228600-35248800 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr6:35228600-35253200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr6:35228800-35234800 Weak transcription HUVEC blood vessel
18 chr6:35228800-35238800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr6:35228800-35242400 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr6:35228800-35242400 Weak transcription NHEK skin
21 chr6:35228800-35243200 Weak transcription Primary neutrophils fromperipheralblood blood
22 chr6:35228800-35244000 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr6:35228800-35248800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr6:35228800-35248800 Weak transcription Spleen Spleen
25 chr6:35228800-35249000 Weak transcription Fetal Intestine Large intestine
26 chr6:35228800-35249000 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr6:35228800-35251400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr6:35229000-35235000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr6:35229000-35237600 Weak transcription Fetal Intestine Small intestine
30 chr6:35229000-35241800 Weak transcription Brain Cingulate Gyrus brain
31 chr6:35229000-35242000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr6:35229000-35242400 Weak transcription Stomach Smooth Muscle stomach
33 chr6:35229000-35243000 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr6:35229000-35248800 Weak transcription Duodenum Mucosa Duodenum
35 chr6:35229000-35248800 Weak transcription Thymus Thymus
36 chr6:35229000-35249000 Weak transcription Liver Liver
37 chr6:35229000-35250400 Weak transcription Fetal Brain Male brain
38 chr6:35229200-35235000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
39 chr6:35229200-35238200 Weak transcription Primary T cells from cord blood blood
40 chr6:35229200-35243000 Weak transcription Adipose Nuclei Adipose
41 chr6:35229200-35246200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr6:35229200-35248800 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr6:35229200-35248800 Weak transcription Dnd41 blood
44 chr6:35229200-35250200 Weak transcription Pancreas Pancrea
45 chr6:35230200-35234400 Enhancers Skeletal Muscle Female skeletal muscle
46 chr6:35230200-35236400 Enhancers Skeletal Muscle Male skeletal muscle
47 chr6:35230600-35242200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr6:35230800-35235400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr6:35230800-35240600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr6:35230800-35241400 Weak transcription NHLF lung

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Last update: Aug 31, 2015