Variant report

Variant	rs57856268
Chromosome Location	chr6:35455756-35455757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35389714..35392038-chr6:35454944..35457241,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10428744	1.00[ASN][1000 genomes]
rs1077822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs16874216	1.00[ASN][1000 genomes]
rs2187903	1.00[ASN][1000 genomes]
rs2228265	1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs34278260	1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs59757151	1.00[ASN][1000 genomes]
rs60569490	1.00[ASN][1000 genomes]
rs61592141	1.00[ASN][1000 genomes]
rs61734578	1.00[ASN][1000 genomes]
rs6457817	1.00[ASN][1000 genomes]
rs6901580	1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	1.00[ASN][1000 genomes]
rs73409769	1.00[ASN][1000 genomes]
rs73409774	1.00[ASN][1000 genomes]
rs73409778	1.00[ASN][1000 genomes]
rs73409793	1.00[ASN][1000 genomes]
rs73411706	1.00[ASN][1000 genomes]
rs73411720	1.00[ASN][1000 genomes]
rs73411726	1.00[ASN][1000 genomes]
rs73411797	1.00[ASN][1000 genomes]
rs73746425	1.00[ASN][1000 genomes]
rs73746430	1.00[ASN][1000 genomes]
rs743965	1.00[ASN][1000 genomes]
rs9462064	1.00[ASN][1000 genomes]
rs9658127	1.00[ASN][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9942465	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
2	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
5	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35438000-35455800	Weak transcription	Brain Angular Gyrus	brain
2	chr6:35438200-35458000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:35440200-35457200	Weak transcription	Psoas Muscle	Psoas
4	chr6:35440600-35455800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:35441800-35458200	Weak transcription	Brain Substantia Nigra	brain
6	chr6:35443200-35458000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:35443600-35462000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:35444200-35455800	Weak transcription	Thymus	Thymus
9	chr6:35444200-35457800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:35452200-35458200	Enhancers	Fetal Heart	heart
11	chr6:35452400-35460000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:35452400-35461400	Enhancers	NH-A	brain
13	chr6:35452600-35456400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:35453800-35457200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:35454200-35455800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:35454200-35455800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:35454200-35458200	Enhancers	HSMMtube	muscle
18	chr6:35454200-35458400	Weak transcription	HepG2	liver
19	chr6:35454200-35459400	Weak transcription	Liver	Liver
20	chr6:35454400-35457800	Enhancers	Fetal Muscle Leg	muscle
21	chr6:35454400-35459000	Enhancers	Placenta	Placenta
22	chr6:35454600-35455800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:35454600-35456200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:35454600-35456200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:35454600-35456400	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr6:35454600-35457200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:35454600-35457400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:35454600-35457400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr6:35454600-35457800	Weak transcription	Spleen	Spleen
30	chr6:35454600-35458000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:35454600-35458200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:35454600-35458200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:35454600-35458200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:35454600-35458200	Enhancers	Fetal Intestine Large	intestine
35	chr6:35454600-35458200	Genic enhancers	Fetal Intestine Small	intestine
36	chr6:35454600-35458200	Enhancers	Fetal Stomach	stomach
37	chr6:35454600-35459200	Enhancers	Placenta Amnion	Placenta Amnion
38	chr6:35454600-35461200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:35454800-35455800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:35454800-35455800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:35454800-35455800	Enhancers	Colon Smooth Muscle	Colon
42	chr6:35454800-35456000	Enhancers	HSMM	muscle
43	chr6:35454800-35456400	Enhancers	H9 Cell Line	embryonic stem cell
44	chr6:35454800-35456400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:35454800-35456400	Enhancers	Colonic Mucosa	Colon
46	chr6:35454800-35456400	Enhancers	Duodenum Mucosa	Duodenum
47	chr6:35454800-35456600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr6:35454800-35457400	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr6:35454800-35457600	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr6:35454800-35457600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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