The 2.0 version of rSNPBase

Variant report

Variant rs1077822
Chromosome Location chr6:35450591-35450592
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:35437800-35451000 Weak transcription Primary neutrophils fromperipheralblood blood
2 chr6:35438000-35455800 Weak transcription Brain Angular Gyrus brain
3 chr6:35438200-35458000 Weak transcription Brain Inferior Temporal Lobe brain
4 chr6:35439200-35452400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr6:35439200-35452600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr6:35439200-35453000 Weak transcription Fetal Kidney kidney
7 chr6:35439400-35452600 Strong transcription Rectal Mucosa Donor 29 rectum
8 chr6:35439800-35452600 Strong transcription Fetal Intestine Small intestine
9 chr6:35440000-35452400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr6:35440200-35452200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr6:35440200-35452400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr6:35440200-35457200 Weak transcription Psoas Muscle Psoas
13 chr6:35440400-35452400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr6:35440400-35452400 Weak transcription Hela-S3 cervix
15 chr6:35440400-35452600 Strong transcription NHLF lung
16 chr6:35440400-35452800 Strong transcription Fetal Stomach stomach
17 chr6:35440400-35453000 Strong transcription Fetal Intestine Large intestine
18 chr6:35440400-35455600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr6:35440600-35455800 Weak transcription Primary B cells from cord blood blood
20 chr6:35440800-35452600 Weak transcription NHDF-Ad bronchial
21 chr6:35441200-35452600 Weak transcription A549 lung
22 chr6:35441400-35452200 Weak transcription HSMM muscle
23 chr6:35441400-35452400 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr6:35441400-35452400 Weak transcription HMEC breast
25 chr6:35441400-35452800 Weak transcription HUVEC blood vessel
26 chr6:35441800-35451200 Strong transcription Breast Myoepithelial Primary Cells Breast
27 chr6:35441800-35458200 Weak transcription Brain Substantia Nigra brain
28 chr6:35442400-35451800 Strong transcription Placenta Amnion Placenta Amnion
29 chr6:35442600-35451400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr6:35442800-35452800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr6:35443200-35450800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr6:35443200-35458000 Weak transcription Brain Anterior Caudate brain
33 chr6:35443600-35451000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr6:35443600-35462000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
35 chr6:35443800-35450800 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
36 chr6:35443800-35452800 Weak transcription Small Intestine intestine
37 chr6:35443800-35455600 Weak transcription Fetal Brain Female brain
38 chr6:35444200-35452800 Weak transcription Stomach Mucosa stomach
39 chr6:35444200-35455800 Weak transcription Thymus Thymus
40 chr6:35444200-35457800 Weak transcription Brain Germinal Matrix brain
41 chr6:35444600-35451000 Strong transcription Esophagus oesophagus
42 chr6:35444800-35452400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr6:35445000-35451000 Strong transcription Osteobl bone
44 chr6:35445400-35451200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr6:35445400-35451800 Weak transcription Fetal Thymus thymus
46 chr6:35445800-35451800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr6:35445800-35452400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr6:35445800-35454200 Strong transcription HepG2 liver
49 chr6:35446000-35451200 Strong transcription Rectal Mucosa Donor 31 rectum
50 chr6:35446000-35452000 Strong transcription H1 Cell Line embryonic stem cell

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Last update: Aug 31, 2015