The 2.0 version of rSNPBase

Variant report

Variant rs11962521
Chromosome Location chr6:35361873-35361874
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:35338400-35378400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr6:35345600-35378400 Weak transcription Aorta Aorta
3 chr6:35351000-35363400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
4 chr6:35354000-35372400 Weak transcription Cortex derived primary cultured neurospheres brain
5 chr6:35355000-35364800 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr6:35357600-35362800 Enhancers Primary T helper cells fromperipheralblood blood
7 chr6:35357800-35362800 Enhancers Primary T helper cells PMA-I stimulated --
8 chr6:35358000-35362800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
9 chr6:35358000-35363400 Enhancers HUVEC blood vessel
10 chr6:35358400-35362800 Enhancers Primary Natural Killer cells fromperipheralblood blood
11 chr6:35358400-35363000 Enhancers Primary T cells fromperipheralblood blood
12 chr6:35358600-35362000 Enhancers Breast Myoepithelial Primary Cells Breast
13 chr6:35359000-35362200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr6:35359200-35362000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
15 chr6:35359200-35362200 Genic enhancers Primary T cells from cord blood blood
16 chr6:35359200-35362200 Enhancers Primary T helper naive cells fromperipheralblood blood
17 chr6:35359200-35362600 Enhancers Primary T helper 17 cells PMA-I stimulated --
18 chr6:35359400-35362000 Enhancers Spleen Spleen
19 chr6:35359400-35362400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
20 chr6:35359400-35363000 Enhancers Primary T helper naive cells from peripheral blood blood
21 chr6:35359400-35363000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
22 chr6:35359400-35363400 Enhancers Primary T killer memory cells from peripheral blood blood
23 chr6:35359400-35363600 Enhancers Left Ventricle heart
24 chr6:35359400-35363600 Enhancers Ovary ovary
25 chr6:35359600-35362000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
26 chr6:35359600-35362200 Enhancers Fetal Heart heart
27 chr6:35359600-35362400 Enhancers HepG2 liver
28 chr6:35359600-35369200 Weak transcription Fetal Kidney kidney
29 chr6:35359800-35362000 Flanking Active TSS HMEC breast
30 chr6:35359800-35362200 Enhancers Osteobl bone
31 chr6:35359800-35362400 Enhancers Muscle Satellite Cultured Cells --
32 chr6:35359800-35363000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr6:35359800-35363000 Genic enhancers Placenta Placenta
34 chr6:35359800-35363000 Enhancers K562 blood
35 chr6:35359800-35364600 Weak transcription NHDF-Ad bronchial
36 chr6:35359800-35378800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
37 chr6:35360000-35362200 Enhancers NH-A brain
38 chr6:35360000-35364600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr6:35360000-35366400 Enhancers Fetal Adrenal Gland Adrenal Gland
40 chr6:35360000-35378200 Weak transcription Colon Smooth Muscle Colon
41 chr6:35360000-35378400 Weak transcription HSMMtube muscle
42 chr6:35360000-35379000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr6:35360000-35382600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr6:35360200-35362400 Enhancers Fetal Intestine Large intestine
45 chr6:35360200-35363200 Enhancers Primary B cells from peripheral blood blood
46 chr6:35360400-35362200 Enhancers Primary T regulatory cells fromperipheralblood blood
47 chr6:35360400-35363400 Enhancers Primary T killer naive cells fromperipheralblood blood
48 chr6:35360400-35372000 Weak transcription Brain Angular Gyrus brain
49 chr6:35360400-35372200 Weak transcription Brain Hippocampus Middle brain
50 chr6:35360600-35362600 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015