Variant report

Variant	rs56809926
Chromosome Location	chr6:35151205-35151206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
2	chr6:35150577..35155004-chr6:35155292..35158233,5	MCF-7	breast:
3	chr6:35113948..35118974-chr6:35150125..35153891,4	MCF-7	breast:
4	chr6:35147410..35151273-chr6:35169982..35172318,3	MCF-7	breast:
5	chr6:35146928..35151829-chr6:35162484..35168348,5	K562	blood:
6	chr6:35149389..35151264-chr6:35177090..35178879,2	MCF-7	breast:
7	chr6:35151150..35153092-chr6:35452515..35454957,2	MCF-7	breast:
8	chr6:35144082..35146423-chr6:35150116..35152992,2	K562	blood:
9	chr6:35148681..35155694-chr6:35156262..35164857,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000124678	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1034450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs12110520	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110664	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111424	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868695	1.00[ASN][1000 genomes]
rs16868699	1.00[ASN][1000 genomes]
rs16872293	1.00[ASN][1000 genomes]
rs16873902	1.00[AMR][1000 genomes]
rs16874216	1.00[ASN][1000 genomes]
rs17511800	1.00[AMR][1000 genomes]
rs2004	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187903	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2228265	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs2894400	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34278260	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34644591	1.00[ASN][1000 genomes]
rs35455943	0.88[EUR][1000 genomes]
rs41270046	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270062	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs57229653	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57794912	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57976333	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58796597	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58850273	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59895076	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60086237	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60113507	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60569490	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61734578	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900879	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901580	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6923025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73403830	1.00[ASN][1000 genomes]
rs73403834	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403837	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403843	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405709	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405725	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405759	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405774	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405795	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405799	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407650	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409769	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409774	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409778	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409793	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411706	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411720	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411726	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411781	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73411797	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs743965	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820102	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462064	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469967	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658079	1.00[AMR][1000 genomes]
rs9658127	1.00[ASN][1000 genomes]
rs9658129	1.00[AMR][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9658132	1.00[AMR][1000 genomes]
rs9658135	1.00[AMR][1000 genomes]
rs9658149	1.00[AMR][1000 genomes]
rs9942465	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35146800-35154400	Enhancers	Fetal Heart	heart
2	chr6:35147600-35152400	Weak transcription	Lung	lung
3	chr6:35149800-35154200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:35149800-35154400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:35149800-35158000	Weak transcription	Aorta	Aorta
6	chr6:35150000-35151800	Weak transcription	HepG2	liver
7	chr6:35150000-35152600	Weak transcription	NHLF	lung
8	chr6:35150000-35153000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:35150000-35153000	Weak transcription	HSMM	muscle
10	chr6:35150000-35153400	Weak transcription	Spleen	Spleen
11	chr6:35150200-35151400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:35150200-35152000	Weak transcription	NHEK	skin
13	chr6:35150200-35152400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:35150200-35152400	Weak transcription	Fetal Intestine Large	intestine
15	chr6:35150200-35152400	Enhancers	A549	lung
16	chr6:35150200-35152400	Weak transcription	NH-A	brain
17	chr6:35150200-35152400	Weak transcription	NHDF-Ad	bronchial
18	chr6:35150200-35152600	Weak transcription	Fetal Intestine Small	intestine
19	chr6:35150200-35152600	Weak transcription	Stomach Mucosa	stomach
20	chr6:35150200-35153000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:35150200-35153400	Weak transcription	Right Atrium	heart
22	chr6:35150200-35154000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:35150200-35154200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:35150200-35156600	Weak transcription	Esophagus	oesophagus
25	chr6:35150400-35152000	Weak transcription	Placenta	Placenta
26	chr6:35150400-35152000	Weak transcription	Left Ventricle	heart
27	chr6:35150400-35152200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:35150400-35152200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:35150400-35152400	Weak transcription	HMEC	breast
30	chr6:35150400-35153200	Weak transcription	Right Ventricle	heart
31	chr6:35150600-35151400	Enhancers	Hela-S3	cervix
32	chr6:35150600-35154200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:35150800-35154000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:35151000-35151600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:35151000-35151600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr6:35151000-35151800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:35151000-35153600	Enhancers	K562	blood
38	chr6:35151000-35154200	Enhancers	Osteobl	bone
39	chr6:35151200-35151600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:35151200-35151800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:35151200-35152600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:35151200-35154200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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