Variant report

Variant	rs73411781
Chromosome Location	chr6:35344374-35344375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35337130..35339523-chr6:35342584..35344904,3	MCF-7	breast:
2	chr6:35343822..35346553-chr6:35354623..35356533,2	K562	blood:
3	chr6:35335918..35339865-chr6:35340596..35344421,5	K562	blood:
4	chr6:35343876..35345476-chr6:35348637..35350211,2	K562	blood:
5	chr6:35335918..35340012-chr6:35342665..35344421,4	K562	blood:
6	chr6:35342473..35346671-chr6:35347993..35350211,4	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1034450	0.81[EUR][1000 genomes]
rs16873902	1.00[AMR][1000 genomes]
rs17511800	1.00[AMR][1000 genomes]
rs2187903	1.00[EUR][1000 genomes]
rs2228265	1.00[EUR][1000 genomes]
rs34278260	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41270062	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56809926	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57229653	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57468283	0.94[EUR][1000 genomes]
rs57794912	0.81[EUR][1000 genomes]
rs58796597	0.81[EUR][1000 genomes]
rs59895076	0.94[EUR][1000 genomes]
rs60569490	1.00[EUR][1000 genomes]
rs61734578	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6901580	1.00[EUR][1000 genomes]
rs6905732	0.81[EUR][1000 genomes]
rs6923025	0.81[EUR][1000 genomes]
rs73405759	1.00[AMR][1000 genomes]
rs73405768	1.00[AMR][1000 genomes]
rs73405774	1.00[AMR][1000 genomes]
rs73405795	1.00[AMR][1000 genomes]
rs73405799	1.00[AMR][1000 genomes]
rs73407619	0.81[EUR][1000 genomes]
rs73407641	0.81[EUR][1000 genomes]
rs73407650	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73407675	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73409765	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73409769	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409774	1.00[EUR][1000 genomes]
rs73409778	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409793	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411720	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411797	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73746425	0.83[EUR][1000 genomes]
rs743965	1.00[EUR][1000 genomes]
rs7773319	0.81[EUR][1000 genomes]
rs9462062	0.81[EUR][1000 genomes]
rs9462064	1.00[EUR][1000 genomes]
rs9469960	0.81[EUR][1000 genomes]
rs9469967	0.81[EUR][1000 genomes]
rs9658079	1.00[AMR][1000 genomes]
rs9658129	1.00[AMR][1000 genomes]
rs9658132	1.00[AMR][1000 genomes]
rs9658135	1.00[AMR][1000 genomes]
rs9658149	1.00[AMR][1000 genomes]
rs9658170	1.00[AMR][1000 genomes]
rs9942465	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35328400-35344800	Weak transcription	Fetal Lung	lung
2	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:35331200-35350800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:35331600-35345400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:35331600-35345400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:35338200-35344400	Weak transcription	Aorta	Aorta
7	chr6:35338200-35344800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:35338200-35356400	Weak transcription	Pancreas	Pancrea
9	chr6:35338400-35350800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:35338600-35345400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:35338600-35359400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:35338800-35344800	Weak transcription	Ovary	ovary
14	chr6:35338800-35350600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:35338800-35353400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:35339000-35351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:35339200-35344800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:35339200-35348600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:35339200-35350200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:35339200-35350600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:35339200-35353400	Weak transcription	Left Ventricle	heart
22	chr6:35339200-35353400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:35339200-35356600	Weak transcription	Esophagus	oesophagus
24	chr6:35339400-35345400	Weak transcription	Brain Angular Gyrus	brain
25	chr6:35339400-35346200	Weak transcription	HSMMtube	muscle
26	chr6:35339400-35349400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:35339400-35350800	Weak transcription	Right Atrium	heart
28	chr6:35339400-35353600	Weak transcription	Small Intestine	intestine
29	chr6:35339600-35348400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:35339600-35348600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:35339600-35350800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:35339600-35350800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:35339600-35350800	Weak transcription	Colonic Mucosa	Colon
34	chr6:35339600-35353400	Weak transcription	HMEC	breast
35	chr6:35339600-35353600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:35339600-35357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:35339800-35347200	Weak transcription	K562	blood
38	chr6:35339800-35348600	Weak transcription	NHDF-Ad	bronchial
39	chr6:35339800-35349600	Weak transcription	Adipose Nuclei	Adipose
40	chr6:35339800-35350400	Weak transcription	Right Ventricle	heart
41	chr6:35339800-35354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:35340000-35347200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:35340000-35350400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:35340000-35350600	Weak transcription	Fetal Intestine Large	intestine
45	chr6:35340000-35357600	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:35340200-35344800	Weak transcription	Fetal Stomach	stomach
47	chr6:35340400-35350800	Weak transcription	Spleen	Spleen
48	chr6:35340600-35359400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:35340800-35349600	Weak transcription	Liver	Liver
50	chr6:35341000-35346000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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