Variant report

Variant	rs58796597
Chromosome Location	chr6:35161614-35161615
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35147873..35150223-chr6:35160298..35162374,2	MCF-7	breast:
2	chr6:35160680..35162385-chr6:35165533..35168085,2	MCF-7	breast:
3	chr6:35159595..35161669-chr6:35171600..35173649,2	K562	blood:
4	chr6:35157511..35159757-chr6:35160633..35163459,2	K562	blood:
5	chr6:35148681..35155694-chr6:35156262..35164857,12	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1034450	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs12110520	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110664	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111424	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868695	1.00[ASN][1000 genomes]
rs16868699	1.00[ASN][1000 genomes]
rs16872293	1.00[ASN][1000 genomes]
rs16874216	1.00[ASN][1000 genomes]
rs2004	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187903	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2228265	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs2894400	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34278260	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34644591	1.00[ASN][1000 genomes]
rs35455943	0.88[EUR][1000 genomes]
rs41270046	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270062	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs56809926	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229653	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57794912	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57976333	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58850273	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59895076	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60086237	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60113507	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60569490	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61734578	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900879	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901580	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6923025	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73403830	1.00[ASN][1000 genomes]
rs73403834	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403837	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403843	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405709	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405725	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405759	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405774	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405795	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405799	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407650	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407675	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409769	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409774	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409778	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409793	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411706	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411720	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411726	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73411781	0.81[EUR][1000 genomes]
rs73411797	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs743965	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820102	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462064	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469967	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658127	1.00[ASN][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9942465	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35154000-35169800	Weak transcription	Right Atrium	heart
2	chr6:35154200-35163400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:35154400-35169200	Weak transcription	Fetal Heart	heart
4	chr6:35158600-35162000	Weak transcription	Osteobl	bone
5	chr6:35158600-35162200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:35158600-35167200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:35159400-35164800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:35159600-35162000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:35159600-35162200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:35159800-35163200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:35160000-35162600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:35160400-35164800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:35160800-35163200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:35160800-35163800	Enhancers	K562	blood
15	chr6:35161000-35161800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:35161000-35161800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:35161000-35162400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:35161000-35167800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:35161400-35163400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:35161400-35164800	Weak transcription	HMEC	breast
21	chr6:35161600-35167800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:35161600-35169400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:35161600-35170000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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