Variant report

Variant	rs34644591
Chromosome Location	chr6:34954963-34954964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:91446501..91447001-chr6:34954264..34955087,2	HCT-116	colon:
2	chr6:34954674..34955203-chr6:35172145..35173032,2	K562	blood:
3	chr6:34948492..34952297-chr6:34954153..34956386,4	K562	blood:
4	chr6:34947461..34949129-chr6:34952748..34955327,2	MCF-7	breast:
5	chr6:34954286..34954970-chr6:35107397..35108331,5	MCF-7	breast:
6	chr6:34954285..34955179-chr6:35208270..35209520,3	K562	blood:
7	chr6:34952785..34956692-chr6:34957031..34961884,7	K562	blood:
8	chr6:34954226..34955209-chr6:35107125..35108338,9	K562	blood:
9	chr6:34937846..34940693-chr6:34953607..34956913,3	K562	blood:
10	chr6:34948492..34951112-chr6:34954153..34956114,2	K562	blood:
11	chr6:34953914..34956313-chr6:34963882..34965683,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196547	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12110520	1.00[ASN][1000 genomes]
rs12110664	1.00[ASN][1000 genomes]
rs12111424	1.00[ASN][1000 genomes]
rs16872293	1.00[ASN][1000 genomes]
rs2004	1.00[ASN][1000 genomes]
rs2894400	1.00[ASN][1000 genomes]
rs41270046	1.00[ASN][1000 genomes]
rs56809926	1.00[ASN][1000 genomes]
rs57794912	1.00[ASN][1000 genomes]
rs57976333	1.00[ASN][1000 genomes]
rs58796597	1.00[ASN][1000 genomes]
rs58850273	1.00[ASN][1000 genomes]
rs60086237	1.00[ASN][1000 genomes]
rs60113507	1.00[ASN][1000 genomes]
rs6900879	1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	1.00[ASN][1000 genomes]
rs6923025	1.00[ASN][1000 genomes]
rs73403830	1.00[ASN][1000 genomes]
rs73403834	1.00[ASN][1000 genomes]
rs73403837	1.00[ASN][1000 genomes]
rs73403843	1.00[ASN][1000 genomes]
rs73403847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403887	1.00[ASN][1000 genomes]
rs73405709	1.00[ASN][1000 genomes]
rs73405725	1.00[ASN][1000 genomes]
rs73405759	1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	1.00[ASN][1000 genomes]
rs73405774	1.00[ASN][1000 genomes]
rs73405795	1.00[ASN][1000 genomes]
rs73405799	1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	1.00[ASN][1000 genomes]
rs73407641	1.00[ASN][1000 genomes]
rs73407650	1.00[ASN][1000 genomes]
rs7773319	1.00[ASN][1000 genomes]
rs820102	1.00[ASN][1000 genomes]
rs9469960	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1033135	chr6:34802652-34957093	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv5257	chr6:34925313-34970101	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34920400-34958600	Weak transcription	Colonic Mucosa	Colon
2	chr6:34925600-34984800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:34926800-34992200	Weak transcription	Small Intestine	intestine
4	chr6:34929400-34963400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:34932400-34981800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:34932800-34962400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:34935200-34958800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:34939400-34958600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:34939400-34978200	Weak transcription	Psoas Muscle	Psoas
10	chr6:34939400-35016000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:34944600-34967200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr6:34945200-34962200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:34945200-34967200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr6:34947800-34967000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:34948200-34963600	Strong transcription	Fetal Intestine Large	intestine
16	chr6:34948600-34967200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:34948800-34955800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:34948800-34963600	Strong transcription	Primary T cells from cord blood	blood
19	chr6:34948800-34963600	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr6:34948800-34964200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:34949200-34963200	Strong transcription	Fetal Thymus	thymus
22	chr6:34949200-34963400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:34949200-34963600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr6:34949400-34955600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:34949400-34955800	Strong transcription	Primary B cells from peripheral blood	blood
26	chr6:34949400-34962800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr6:34949400-34963600	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr6:34949600-34955400	Strong transcription	Placenta	Placenta
29	chr6:34949600-34955800	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr6:34949800-34957600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:34949800-34966800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:34950000-34958600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:34950000-34963200	Strong transcription	Primary B cells from cord blood	blood
34	chr6:34950200-34958800	Weak transcription	NHLF	lung
35	chr6:34950400-34955800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:34950400-34956000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:34950400-34956000	Strong transcription	HMEC	breast
38	chr6:34950400-34957800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:34950400-34958400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:34950400-34958800	Weak transcription	NH-A	brain
41	chr6:34950600-34957600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr6:34950600-34958800	Weak transcription	NHDF-Ad	bronchial
43	chr6:34950600-34960000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:34950600-34964200	Strong transcription	Primary hematopoietic stem cells	blood
45	chr6:34950800-34960000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:34951000-34959800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:34951200-34960400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:34951400-34961400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:34951800-34955000	Strong transcription	K562	blood
50	chr6:34951800-34963600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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