Variant report

Variant	rs2894400
Chromosome Location	chr6:35149735-35149736
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35127079..35138793-chr6:35145525..35157743,32	MCF-7	breast:
2	chr6:35119279..35121537-chr6:35147804..35149813,2	K562	blood:
3	chr6:35147873..35150223-chr6:35160298..35162374,2	MCF-7	breast:
4	chr6:35147410..35151273-chr6:35169982..35172318,3	MCF-7	breast:
5	chr6:35146928..35151829-chr6:35162484..35168348,5	K562	blood:
6	chr6:35149389..35151264-chr6:35177090..35178879,2	MCF-7	breast:
7	chr6:35148681..35155694-chr6:35156262..35164857,12	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1034450	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs12110520	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110664	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111424	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868695	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16868699	0.85[YRI][hapmap];1.00[ASN][1000 genomes]
rs16872293	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16873902	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs16874216	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17511800	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs2004	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187903	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs2228265	1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs34278260	1.00[ASN][1000 genomes]
rs34644591	1.00[ASN][1000 genomes]
rs35455943	1.00[EUR][1000 genomes]
rs41270046	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270048	0.81[EUR][1000 genomes]
rs41270062	1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs56809926	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229653	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57794912	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57976333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58796597	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58850273	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59895076	1.00[ASN][1000 genomes]
rs60086237	1.00[ASN][1000 genomes]
rs60113507	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60569490	1.00[ASN][1000 genomes]
rs61734578	1.00[ASN][1000 genomes]
rs6457815	1.00[CHD][hapmap]
rs6900879	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901580	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6923025	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73403830	1.00[ASN][1000 genomes]
rs73403834	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405709	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405795	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407641	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407650	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407675	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	1.00[ASN][1000 genomes]
rs73409769	1.00[ASN][1000 genomes]
rs73409774	1.00[ASN][1000 genomes]
rs73409778	1.00[ASN][1000 genomes]
rs73409793	1.00[ASN][1000 genomes]
rs73411706	1.00[ASN][1000 genomes]
rs73411720	1.00[ASN][1000 genomes]
rs73411726	1.00[ASN][1000 genomes]
rs73411797	1.00[ASN][1000 genomes]
rs743965	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs7771323	1.00[CEU][hapmap]
rs7773319	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820102	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462064	1.00[CEU][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs9469960	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469967	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658079	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs9658085	1.00[CHD][hapmap]
rs9658127	1.00[ASN][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9942465	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35144000-35150200	Enhancers	NHDF-Ad	bronchial
2	chr6:35145000-35150200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr6:35146000-35150000	Enhancers	NHLF	lung
4	chr6:35146800-35149800	Enhancers	Fetal Stomach	stomach
5	chr6:35146800-35154400	Enhancers	Fetal Heart	heart
6	chr6:35147400-35150000	Enhancers	Colon Smooth Muscle	Colon
7	chr6:35147600-35150200	Enhancers	Stomach Smooth Muscle	stomach
8	chr6:35147600-35152400	Weak transcription	Lung	lung
9	chr6:35148000-35150000	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:35148000-35151200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:35148200-35151000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:35148200-35151000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:35148400-35149800	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr6:35148600-35149800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:35148600-35150000	Enhancers	K562	blood
16	chr6:35148600-35150200	Enhancers	Adipose Nuclei	Adipose
17	chr6:35148800-35149800	Enhancers	Fetal Intestine Large	intestine
18	chr6:35148800-35149800	Enhancers	Fetal Intestine Small	intestine
19	chr6:35148800-35149800	Enhancers	Ovary	ovary
20	chr6:35148800-35149800	Flanking Active TSS	Hela-S3	cervix
21	chr6:35148800-35150000	Enhancers	Fetal Lung	lung
22	chr6:35148800-35150000	Enhancers	Rectal Smooth Muscle	rectum
23	chr6:35148800-35150200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:35148800-35150200	Enhancers	Esophagus	oesophagus
25	chr6:35148800-35150200	Enhancers	Right Atrium	heart
26	chr6:35148800-35150200	Enhancers	NH-A	brain
27	chr6:35148800-35150400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:35148800-35150400	Enhancers	HMEC	breast
29	chr6:35149000-35149800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:35149000-35150000	Enhancers	Brain Angular Gyrus	brain
31	chr6:35149000-35150000	Enhancers	HSMMtube	muscle
32	chr6:35149000-35150200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:35149000-35150400	Enhancers	Placenta	Placenta
34	chr6:35149200-35149800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:35149200-35150000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:35149200-35150000	Enhancers	Brain Anterior Caudate	brain
37	chr6:35149200-35150000	Enhancers	HUVEC	blood vessel
38	chr6:35149200-35150200	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:35149200-35150200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:35149200-35150400	Bivalent Enhancer	Fetal Muscle Leg	muscle
41	chr6:35149400-35149800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
42	chr6:35149400-35149800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
43	chr6:35149400-35149800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
44	chr6:35149400-35149800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:35149400-35149800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr6:35149400-35149800	Enhancers	Aorta	Aorta
47	chr6:35149400-35149800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
48	chr6:35149400-35149800	Flanking Active TSS	HSMM	muscle
49	chr6:35149400-35149800	Flanking Active TSS	Osteobl	bone
50	chr6:35149400-35150000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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