Variant report

Variant	rs57976333
Chromosome Location	chr6:35028669-35028670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35027834..35029968-chr6:35032421..35033978,2	K562	blood:
2	chr6:35021741..35024244-chr6:35027456..35030264,2	K562	blood:
3	chr6:35027650..35029628-chr6:35048238..35049961,2	K562	blood:
4	chr6:35020474..35024244-chr6:35026178..35030264,6	K562	blood:
5	chr6:35028358..35030424-chr6:35067760..35070087,2	MCF-7	breast:
6	chr6:35027752..35029526-chr6:35031427..35033441,2	MCF-7	breast:
7	chr6:35027834..35030317-chr6:35032384..35033921,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1034450	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110520	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111424	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868695	1.00[ASN][1000 genomes]
rs16868699	1.00[ASN][1000 genomes]
rs16872293	1.00[ASN][1000 genomes]
rs2004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2228265	1.00[ASN][1000 genomes]
rs28627111	1.00[ASN][1000 genomes]
rs2894400	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34644591	1.00[ASN][1000 genomes]
rs35455943	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41270046	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270048	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41270062	1.00[ASN][1000 genomes]
rs56809926	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229653	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57794912	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58796597	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58850273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59895076	1.00[ASN][1000 genomes]
rs60086237	1.00[ASN][1000 genomes]
rs60113507	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60569490	1.00[ASN][1000 genomes]
rs6900879	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901580	1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923025	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	1.00[ASN][1000 genomes]
rs73403830	1.00[ASN][1000 genomes]
rs73403834	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403837	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403843	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405709	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405725	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405795	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405799	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407641	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407650	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407675	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs743965	1.00[ASN][1000 genomes]
rs7773319	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462064	1.00[ASN][1000 genomes]
rs9469960	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469967	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34994600-35036000	Weak transcription	K562	blood
2	chr6:35015800-35044200	Weak transcription	HMEC	breast
3	chr6:35016200-35055000	Weak transcription	Hela-S3	cervix
4	chr6:35017600-35036200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:35017800-35053000	Weak transcription	Small Intestine	intestine
6	chr6:35018400-35052800	Weak transcription	Fetal Kidney	kidney
7	chr6:35018600-35051000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:35018800-35029000	Weak transcription	NHDF-Ad	bronchial
9	chr6:35018800-35038200	Strong transcription	Duodenum Mucosa	Duodenum
10	chr6:35018800-35060600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:35020000-35059800	Strong transcription	Fetal Intestine Small	intestine
12	chr6:35020200-35037600	Strong transcription	Fetal Intestine Large	intestine
13	chr6:35020400-35059400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:35020600-35034800	Strong transcription	Primary T cells from cord blood	blood
15	chr6:35021000-35037000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr6:35021000-35037600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:35021200-35034800	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr6:35021400-35036200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:35021400-35037400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:35021600-35036800	Strong transcription	Colonic Mucosa	Colon
21	chr6:35021800-35028800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:35021800-35055400	Weak transcription	HSMM	muscle
23	chr6:35022000-35034800	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr6:35022000-35036600	Strong transcription	Placenta	Placenta
25	chr6:35022400-35029000	Genic enhancers	Left Ventricle	heart
26	chr6:35022400-35036200	Strong transcription	Pancreas	Pancrea
27	chr6:35022600-35028800	Weak transcription	NH-A	brain
28	chr6:35022600-35028800	Weak transcription	Osteobl	bone
29	chr6:35022600-35037200	Strong transcription	Gastric	stomach
30	chr6:35023000-35029000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:35023000-35033200	Weak transcription	Aorta	Aorta
32	chr6:35024000-35039200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:35024400-35028800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:35024400-35031200	Strong transcription	Esophagus	oesophagus
35	chr6:35024600-35034800	Strong transcription	Ovary	ovary
36	chr6:35024600-35035400	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:35024800-35062000	Weak transcription	A549	lung
38	chr6:35025000-35029200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:35025000-35029400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:35025200-35029400	Genic enhancers	Fetal Muscle Trunk	muscle
41	chr6:35025200-35037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:35025400-35030600	Weak transcription	HUVEC	blood vessel
43	chr6:35025600-35029200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:35025600-35056000	Strong transcription	Liver	Liver
45	chr6:35025800-35029000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:35025800-35031400	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:35025800-35035400	Strong transcription	HSMMtube	muscle
48	chr6:35026000-35031000	Weak transcription	Fetal Heart	heart
49	chr6:35026000-35032200	Genic enhancers	Adipose Nuclei	Adipose
50	chr6:35026200-35029200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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