Variant report

Variant	rs6900879
Chromosome Location	chr6:35168381-35168382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35153852..35155613-chr6:35168335..35170361,2	MCF-7	breast:
2	chr6:35147825..35149730-chr6:35166517..35168770,2	MCF-7	breast:
3	chr6:35167248..35168898-chr6:35172556..35174347,2	MCF-7	breast:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1034450	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10428744	1.00[ASN][1000 genomes]
rs11962521	1.00[ASN][1000 genomes]
rs11962524	1.00[ASN][1000 genomes]
rs12110520	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110664	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111424	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868695	0.86[ASW][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16868699	0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs16872293	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16873902	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs16874062	0.84[ASW][hapmap]
rs16874216	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16874262	0.84[ASW][hapmap]
rs17511800	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs2004	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2187903	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2228265	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28627111	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2894400	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34278260	1.00[ASN][1000 genomes]
rs34644591	1.00[ASN][1000 genomes]
rs35455943	0.82[EUR][1000 genomes]
rs41270046	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41270062	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45482297	1.00[ASN][1000 genomes]
rs56809926	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229653	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57468283	1.00[ASN][1000 genomes]
rs57794912	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57976333	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58796597	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58850273	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59895076	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60086237	1.00[ASN][1000 genomes]
rs60113507	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60569490	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61592141	1.00[ASN][1000 genomes]
rs61734578	1.00[ASN][1000 genomes]
rs6457815	1.00[CHD][hapmap]
rs6457817	1.00[ASN][1000 genomes]
rs6901580	1.00[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6904477	1.00[ASN][1000 genomes]
rs6905732	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911817	1.00[ASN][1000 genomes]
rs6923025	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934083	1.00[ASN][1000 genomes]
rs6938138	0.86[ASW][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6939017	1.00[ASN][1000 genomes]
rs73403830	1.00[ASN][1000 genomes]
rs73403834	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403837	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403843	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73403847	1.00[ASN][1000 genomes]
rs73403887	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405709	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405725	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405759	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405765	1.00[ASN][1000 genomes]
rs73405768	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405774	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405795	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73405799	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407610	1.00[ASN][1000 genomes]
rs73407613	1.00[ASN][1000 genomes]
rs73407619	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407650	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407675	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409710	1.00[ASN][1000 genomes]
rs73409758	1.00[ASN][1000 genomes]
rs73409765	1.00[ASN][1000 genomes]
rs73409769	1.00[ASN][1000 genomes]
rs73409774	1.00[ASN][1000 genomes]
rs73409778	1.00[ASN][1000 genomes]
rs73409793	1.00[ASN][1000 genomes]
rs73411706	1.00[ASN][1000 genomes]
rs73411720	1.00[ASN][1000 genomes]
rs73411726	1.00[ASN][1000 genomes]
rs73411797	1.00[ASN][1000 genomes]
rs743965	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7770619	1.00[CHD][hapmap]
rs7771323	1.00[CEU][hapmap]
rs7773319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs820102	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462062	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462064	1.00[CEU][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9469960	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469967	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658079	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs9658085	1.00[CHD][hapmap]
rs9658127	1.00[ASN][1000 genomes]
rs9658131	1.00[ASN][1000 genomes]
rs9942465	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35154000-35169800	Weak transcription	Right Atrium	heart
2	chr6:35154400-35169200	Weak transcription	Fetal Heart	heart
3	chr6:35161600-35169400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:35161600-35170000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:35163200-35171200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:35163600-35171000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:35165200-35169400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:35165200-35171200	Weak transcription	NH-A	brain
9	chr6:35165600-35169400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:35166200-35168800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:35167000-35168400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:35167000-35168600	Enhancers	Brain Cingulate Gyrus	brain
13	chr6:35167000-35169200	Enhancers	HepG2	liver
14	chr6:35167200-35168400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:35167200-35168400	Enhancers	Brain Substantia Nigra	brain
16	chr6:35167400-35168400	Enhancers	Osteobl	bone
17	chr6:35167400-35168600	Enhancers	Brain Angular Gyrus	brain
18	chr6:35167600-35170200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:35167600-35171600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:35167800-35168600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:35167800-35168600	Enhancers	HMEC	breast
22	chr6:35167800-35169800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:35168000-35169400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:35168000-35171200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:35168200-35169600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:35168200-35169800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:35168200-35169800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:35168200-35170000	Weak transcription	Brain Anterior Caudate	brain
29	chr6:35168200-35170000	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:35168200-35176200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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