Variant report

Variant	rs16874262
Chromosome Location	chr6:35265711-35265712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35257372..35267692-chr6:35433856..35438688,25	K562	blood:
2	chr6:35265057..35265957-chr6:35419424..35420709,3	K562	blood:
3	chr6:35264065..35266185-chr6:35435418..35437067,2	MCF-7	breast:
4	chr6:35260730..35269335-chr6:35433870..35444063,22	MCF-7	breast:
5	chr6:35265003..35267090-chr6:35463346..35464932,2	K562	blood:
6	chr6:35261055..35266113-chr6:35308586..35312212,6	K562	blood:
7	chr6:35262981..35267829-chr6:35418945..35424124,7	K562	blood:
8	chr6:35257372..35267871-chr6:35433266..35439192,25	K562	blood:
9	chr6:35265354..35265988-chr6:35435663..35436240,2	MCF-7	breast:
10	chr6:35265112..35265974-chr6:35435522..35436961,5	MCF-7	breast:
11	chr6:35260793..35263953-chr6:35263989..35266366,4	K562	blood:
12	chr6:35265067..35266084-chr6:35435395..35436525,11	K562	blood:
13	chr10:126106993..126107965-chr6:35265223..35265797,2	HCT-116	colon:
14	chr6:35265198..35265903-chr6:35309667..35310572,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000065154	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000007866	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1034450	0.81[AMR][1000 genomes]
rs12332985	0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16868709	0.84[ASW][hapmap];0.94[LWK][hapmap];0.80[MKK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs16874062	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2187903	0.81[AMR][1000 genomes]
rs2228265	0.81[AMR][1000 genomes]
rs28627111	0.81[AMR][1000 genomes]
rs59895076	0.81[AMR][1000 genomes]
rs60569490	0.81[AMR][1000 genomes]
rs61534122	0.81[AFR][1000 genomes]
rs6901580	0.81[AMR][1000 genomes]
rs6906117	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs743965	0.81[AMR][1000 genomes]
rs9296145	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs9462061	0.83[LWK][hapmap]
rs9462062	0.81[AMR][1000 genomes]
rs9462064	0.81[AMR][1000 genomes]
rs9462066	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462070	0.93[YRI][hapmap]
rs9462076	0.89[AFR][1000 genomes]
rs9469959	0.85[AMR][1000 genomes]
rs9469960	0.81[AMR][1000 genomes]
rs9469965	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469966	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469967	0.81[AMR][1000 genomes]
rs9469969	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9469977	0.86[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469983	0.84[LWK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs9469984	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469987	0.93[YRI][hapmap]
rs9469993	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9469999	0.85[AFR][1000 genomes]
rs9470003	0.93[YRI][hapmap]
rs9470004	0.84[ASW][hapmap];0.94[LWK][hapmap];0.80[MKK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs9470008	0.89[AFR][1000 genomes]
rs9470011	0.84[ASW][hapmap];0.94[LWK][hapmap];0.80[MKK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs9470012	0.89[AFR][1000 genomes]
rs9658064	0.86[AFR][1000 genomes]
rs9658065	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35248800-35265800	Strong transcription	Brain Inferior Temporal Lobe	brain
2	chr6:35249000-35266800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:35251000-35266800	Weak transcription	Fetal Brain Male	brain
4	chr6:35261200-35270400	Weak transcription	Hela-S3	cervix
5	chr6:35263000-35270400	Weak transcription	A549	lung
6	chr6:35263200-35270600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:35263200-35270600	Weak transcription	NHDF-Ad	bronchial
8	chr6:35263400-35265800	Weak transcription	Brain Angular Gyrus	brain
9	chr6:35263400-35270200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:35263600-35266000	Weak transcription	Aorta	Aorta
11	chr6:35264400-35266200	Weak transcription	Ovary	ovary
12	chr6:35264400-35267400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:35264600-35265800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:35264600-35270400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:35264800-35269400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr6:35265000-35265800	Enhancers	Psoas Muscle	Psoas
17	chr6:35265000-35266000	Enhancers	NH-A	brain
18	chr6:35265000-35266000	Enhancers	NHLF	lung
19	chr6:35265000-35266200	Enhancers	Fetal Heart	heart
20	chr6:35265000-35266400	Enhancers	HUVEC	blood vessel
21	chr6:35265000-35266600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr6:35265000-35268200	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:35265000-35268400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr6:35265000-35269200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:35265000-35269400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr6:35265200-35265800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr6:35265200-35265800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:35265200-35265800	Flanking Active TSS	Fetal Muscle Trunk	muscle
29	chr6:35265200-35266200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:35265200-35266200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:35265200-35266400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr6:35265200-35266600	Flanking Active TSS	NHEK	skin
33	chr6:35265200-35266800	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr6:35265200-35266800	Flanking Active TSS	HepG2	liver
35	chr6:35265200-35266800	Flanking Active TSS	K562	blood
36	chr6:35265200-35267800	Weak transcription	Brain Germinal Matrix	brain
37	chr6:35265200-35268200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:35265200-35270200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:35265200-35270200	Weak transcription	Osteobl	bone
40	chr6:35265200-35270600	Weak transcription	HSMM	muscle
41	chr6:35265200-35285600	Weak transcription	Brain Substantia Nigra	brain
42	chr6:35265400-35265800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:35265400-35265800	Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr6:35265400-35265800	Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr6:35265400-35265800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:35265400-35265800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:35265400-35265800	Active TSS	Colon Smooth Muscle	Colon
48	chr6:35265400-35265800	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr6:35265400-35265800	Flanking Active TSS	Fetal Lung	lung
50	chr6:35265400-35265800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle

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