Variant report

Variant	rs9469959
Chromosome Location	chr6:35166888-35166889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16874062	0.85[AMR][1000 genomes]
rs16874262	0.85[AMR][1000 genomes]
rs6906117	0.85[AMR][1000 genomes]
rs9462066	0.85[AMR][1000 genomes]
rs9469965	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9469966	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9469969	0.82[AFR][1000 genomes]
rs9469977	0.85[AMR][1000 genomes]
rs9469984	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35154000-35169800	Weak transcription	Right Atrium	heart
2	chr6:35154400-35169200	Weak transcription	Fetal Heart	heart
3	chr6:35158600-35167200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:35161000-35167800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:35161600-35167800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:35161600-35169400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:35161600-35170000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:35163200-35171200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:35163600-35167200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:35163600-35171000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:35165200-35169400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:35165200-35171200	Weak transcription	NH-A	brain
13	chr6:35165400-35167000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:35165400-35167800	Weak transcription	HMEC	breast
15	chr6:35165600-35168000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:35165600-35169400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:35166200-35168800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr6:35166800-35167400	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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