Variant report

Variant	rs9469984
Chromosome Location	chr6:35274599-35274600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35272317..35274609-chr6:35284789..35286742,2	K562	blood:
2	chr6:35270811..35278072-chr6:35434777..35439344,8	MCF-7	breast:
3	chr6:35265465..35267988-chr6:35269395..35275247,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction
ENSG00000023892	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1034450	0.81[AMR][1000 genomes]
rs12332985	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16868709	0.91[AFR][1000 genomes]
rs16874062	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16874262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2187903	0.81[AMR][1000 genomes]
rs2228265	0.81[AMR][1000 genomes]
rs28627111	0.81[AMR][1000 genomes]
rs59895076	0.81[AMR][1000 genomes]
rs60569490	0.81[AMR][1000 genomes]
rs61534122	0.84[AFR][1000 genomes]
rs6901580	0.81[AMR][1000 genomes]
rs6906117	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs743965	0.81[AMR][1000 genomes]
rs9296145	0.84[AFR][1000 genomes]
rs9462062	0.81[AMR][1000 genomes]
rs9462064	0.81[AMR][1000 genomes]
rs9462066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462070	0.81[AFR][1000 genomes]
rs9462076	0.91[AFR][1000 genomes]
rs9469959	0.85[AMR][1000 genomes]
rs9469960	0.81[AMR][1000 genomes]
rs9469965	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469966	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469967	0.81[AMR][1000 genomes]
rs9469969	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9469977	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469983	0.84[AFR][1000 genomes]
rs9469987	0.81[AFR][1000 genomes]
rs9469993	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9469999	0.87[AFR][1000 genomes]
rs9470003	0.81[AFR][1000 genomes]
rs9470004	0.91[AFR][1000 genomes]
rs9470005	0.81[AFR][1000 genomes]
rs9470008	0.91[AFR][1000 genomes]
rs9470011	0.91[AFR][1000 genomes]
rs9470012	0.91[AFR][1000 genomes]
rs9658064	0.89[AFR][1000 genomes]
rs9658065	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35265200-35285600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:35266600-35279800	Weak transcription	Fetal Stomach	stomach
3	chr6:35266800-35277400	Weak transcription	Pancreas	Pancrea
4	chr6:35268600-35278600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:35270600-35277400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:35270600-35278200	Weak transcription	Esophagus	oesophagus
7	chr6:35271000-35277400	Weak transcription	Spleen	Spleen
8	chr6:35271200-35277200	Weak transcription	NH-A	brain
9	chr6:35271200-35277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:35271200-35278000	Weak transcription	Right Atrium	heart
11	chr6:35271400-35277600	Weak transcription	Colonic Mucosa	Colon
12	chr6:35271400-35279800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:35271400-35285000	Weak transcription	HepG2	liver
14	chr6:35271600-35278000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:35271600-35285200	Weak transcription	Fetal Intestine Large	intestine
16	chr6:35271600-35285600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:35271800-35278400	Genic enhancers	Primary T cells fromperipheralblood	blood
18	chr6:35272200-35275200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:35272200-35275800	Strong transcription	Thymus	Thymus
20	chr6:35272200-35276400	Strong transcription	Fetal Thymus	thymus
21	chr6:35272400-35274600	Weak transcription	K562	blood
22	chr6:35272400-35275000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:35272400-35275800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:35272400-35276800	Weak transcription	NHEK	skin
25	chr6:35272400-35277800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr6:35272400-35278000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:35272400-35278200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:35272400-35279200	Weak transcription	Adipose Nuclei	Adipose
29	chr6:35272400-35284600	Weak transcription	HMEC	breast
30	chr6:35272400-35285400	Weak transcription	Gastric	stomach
31	chr6:35272600-35274600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:35272600-35276800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:35272600-35276800	Weak transcription	GM12878-XiMat	blood
34	chr6:35272600-35277000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:35272600-35280200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:35272800-35276800	Weak transcription	Dnd41	blood
37	chr6:35273000-35277600	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr6:35273200-35277800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
39	chr6:35273200-35278200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:35273400-35275600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:35273600-35275000	Weak transcription	Placenta	Placenta
42	chr6:35273600-35276800	Weak transcription	Fetal Intestine Small	intestine
43	chr6:35273600-35277000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:35273800-35274600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:35273800-35276800	Strong transcription	Primary B cells from peripheral blood	blood
46	chr6:35274000-35274800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:35274200-35275400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:35274200-35275600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr6:35274200-35275800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:35274200-35277600	Strong transcription	Monocytes-CD14+_RO01746	blood

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