Variant report

Variant	rs6906117
Chromosome Location	chr6:35257587-35257588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35257372..35267692-chr6:35433856..35438688,25	K562	blood:
2	chr6:35249084..35250623-chr6:35257544..35259252,2	K562	blood:
3	chr6:35257372..35267871-chr6:35433266..35439192,25	K562	blood:
4	chr6:35246027..35248636-chr6:35256362..35259895,3	K562	blood:
5	chr6:35246027..35248404-chr6:35256900..35259895,2	K562	blood:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction
ENSG00000217004	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1034450	0.81[AMR][1000 genomes]
rs12332985	0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16868709	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs16874062	0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16874262	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2187903	0.81[AMR][1000 genomes]
rs2228265	0.81[AMR][1000 genomes]
rs28627111	0.81[AMR][1000 genomes]
rs59895076	0.81[AMR][1000 genomes]
rs60569490	0.81[AMR][1000 genomes]
rs6901580	0.81[AMR][1000 genomes]
rs743965	0.81[AMR][1000 genomes]
rs9296145	0.87[YRI][hapmap]
rs9462061	0.85[YRI][hapmap]
rs9462062	0.81[AMR][1000 genomes]
rs9462064	0.81[AMR][1000 genomes]
rs9462066	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462070	0.87[YRI][hapmap]
rs9462076	0.85[AFR][1000 genomes]
rs9469959	0.85[AMR][1000 genomes]
rs9469960	0.81[AMR][1000 genomes]
rs9469965	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469966	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469967	0.81[AMR][1000 genomes]
rs9469969	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9469977	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469983	0.85[YRI][hapmap]
rs9469984	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469987	0.87[YRI][hapmap]
rs9469993	0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9469999	0.81[AFR][1000 genomes]
rs9470003	0.87[YRI][hapmap]
rs9470004	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs9470008	0.85[AFR][1000 genomes]
rs9470011	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs9470012	0.85[AFR][1000 genomes]
rs9658064	0.83[AFR][1000 genomes]
rs9658065	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
2	chr6:35233800-35258400	Weak transcription	Small Intestine	intestine
3	chr6:35237800-35264800	Weak transcription	K562	blood
4	chr6:35243400-35265000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:35247800-35264600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:35248000-35264800	Strong transcription	Stomach Smooth Muscle	stomach
7	chr6:35248400-35262200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:35248400-35263400	Strong transcription	Rectal Smooth Muscle	rectum
9	chr6:35248400-35264400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:35248600-35264200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr6:35248600-35264200	Strong transcription	Fetal Thymus	thymus
12	chr6:35248600-35264400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:35248800-35260000	Strong transcription	Primary B cells from peripheral blood	blood
14	chr6:35248800-35260200	Strong transcription	Primary B cells from cord blood	blood
15	chr6:35248800-35261200	Weak transcription	A549	lung
16	chr6:35248800-35262000	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:35248800-35263600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:35248800-35263600	Strong transcription	Duodenum Mucosa	Duodenum
19	chr6:35248800-35263800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:35248800-35264000	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:35248800-35264000	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:35248800-35264000	Strong transcription	Dnd41	blood
23	chr6:35248800-35264200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:35248800-35264400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:35248800-35264400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:35248800-35264400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:35248800-35264400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:35248800-35264600	Strong transcription	Primary T cells from cord blood	blood
29	chr6:35248800-35264600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:35248800-35264800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:35248800-35264800	Strong transcription	Thymus	Thymus
32	chr6:35248800-35265000	Strong transcription	Fetal Intestine Small	intestine
33	chr6:35248800-35265000	Strong transcription	Fetal Stomach	stomach
34	chr6:35248800-35265400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:35248800-35265800	Strong transcription	Brain Inferior Temporal Lobe	brain
36	chr6:35249000-35263400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:35249000-35264200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr6:35249000-35264600	Strong transcription	Brain Anterior Caudate	brain
39	chr6:35249000-35264600	Strong transcription	Brain Cingulate Gyrus	brain
40	chr6:35249000-35264600	Strong transcription	Fetal Intestine Large	intestine
41	chr6:35249000-35265000	Strong transcription	Liver	Liver
42	chr6:35249000-35265200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:35249000-35265200	Strong transcription	Osteobl	bone
44	chr6:35249000-35265400	Weak transcription	Right Atrium	heart
45	chr6:35249000-35266800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr6:35249200-35264400	Strong transcription	Placenta	Placenta
47	chr6:35249200-35265400	Strong transcription	Fetal Brain Female	brain
48	chr6:35249400-35263600	Strong transcription	Aorta	Aorta
49	chr6:35250000-35263400	Strong transcription	Brain Angular Gyrus	brain
50	chr6:35250000-35263600	Strong transcription	GM12878-XiMat	blood

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