Variant report

Variant	rs9469999
Chromosome Location	chr6:35315140-35315141
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35315105..35319537-chr6:35325978..35330834,4	K562	blood:
2	chr6:35314045..35316677-chr6:35329976..35332837,2	K562	blood:
3	chr6:35310212..35313058-chr6:35313527..35317832,4	MCF-7	breast:
4	chr6:35310869..35315599-chr6:35463091..35467750,4	K562	blood:
5	chr6:35313773..35316682-chr6:35327162..35330055,2	MCF-7	breast:
6	chr6:35311203..35312769-chr6:35313218..35316156,2	K562	blood:

Variant related genes	Relation type
ENSG00000112033	Chromatin interaction
ENSG00000007866	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12332985	0.93[AFR][1000 genomes]
rs16868709	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16874062	0.83[AFR][1000 genomes]
rs16874262	0.85[AFR][1000 genomes]
rs6906117	0.81[AFR][1000 genomes]
rs9462066	0.83[AFR][1000 genomes]
rs9462076	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9469984	0.87[AFR][1000 genomes]
rs9469993	0.96[AFR][1000 genomes]
rs9470004	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9470008	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9470011	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9470012	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9658064	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9658065	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311400-35316200	Weak transcription	Pancreas	Pancrea
2	chr6:35311400-35320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:35311400-35323800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:35311400-35326800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:35311600-35316000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:35311600-35316200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:35311600-35320400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:35311600-35323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:35311600-35324200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:35311600-35327600	Weak transcription	A549	lung
11	chr6:35311800-35316600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr6:35311800-35318400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr6:35311800-35320600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:35311800-35324000	Weak transcription	Right Atrium	heart
15	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
16	chr6:35312000-35315800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:35312000-35318400	Genic enhancers	Primary B cells from peripheral blood	blood
18	chr6:35312000-35328200	Weak transcription	Stomach Mucosa	stomach
19	chr6:35312200-35316200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:35312200-35318200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:35312200-35326400	Weak transcription	Fetal Brain Female	brain
22	chr6:35312400-35315200	Genic enhancers	Fetal Muscle Leg	muscle
23	chr6:35312400-35315200	Transcr. at gene 5' and 3'	Psoas Muscle	Psoas
24	chr6:35312400-35317600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:35312600-35315600	Genic enhancers	Primary T cells fromperipheralblood	blood
26	chr6:35312600-35315800	Strong transcription	Fetal Intestine Large	intestine
27	chr6:35312600-35316000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr6:35312600-35316800	Strong transcription	NHEK	skin
29	chr6:35312600-35317600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:35312600-35324600	Weak transcription	Brain Germinal Matrix	brain
31	chr6:35312600-35324800	Weak transcription	Fetal Heart	heart
32	chr6:35312800-35315200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:35312800-35315800	Weak transcription	Fetal Thymus	thymus
34	chr6:35312800-35316000	Weak transcription	Right Ventricle	heart
35	chr6:35312800-35316200	Weak transcription	Gastric	stomach
36	chr6:35312800-35318000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:35312800-35326800	Weak transcription	Fetal Brain Male	brain
38	chr6:35312800-35327400	Strong transcription	Fetal Stomach	stomach
39	chr6:35313000-35316000	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:35313000-35317400	Strong transcription	NH-A	brain
41	chr6:35313000-35317600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:35313000-35317800	Strong transcription	Left Ventricle	heart
43	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
44	chr6:35313200-35315400	Genic enhancers	Brain Substantia Nigra	brain
45	chr6:35313200-35315400	Strong transcription	Duodenum Mucosa	Duodenum
46	chr6:35313200-35316200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:35313200-35316400	Strong transcription	Rectal Smooth Muscle	rectum
48	chr6:35313200-35317400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:35313200-35317400	Strong transcription	Thymus	Thymus
50	chr6:35313200-35317600	Strong transcription	NHLF	lung

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