Variant report

Variant	rs9462066
Chromosome Location	chr6:35248319-35248320
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr6:35247554-35249060	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35248152..35248864-chr6:35261794..35262438,2	K562	blood:

Variant related genes	Relation type
ENSG00000217004	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1034450	0.81[AMR][1000 genomes]
rs12332985	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16868709	0.86[AFR][1000 genomes]
rs16874062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16874262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2187903	0.81[AMR][1000 genomes]
rs2228265	0.81[AMR][1000 genomes]
rs28627111	0.81[AMR][1000 genomes]
rs59895076	0.81[AMR][1000 genomes]
rs60569490	0.81[AMR][1000 genomes]
rs6901580	0.81[AMR][1000 genomes]
rs6906117	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs743965	0.81[AMR][1000 genomes]
rs9462062	0.81[AMR][1000 genomes]
rs9462064	0.81[AMR][1000 genomes]
rs9462076	0.86[AFR][1000 genomes]
rs9469959	0.85[AMR][1000 genomes]
rs9469960	0.81[AMR][1000 genomes]
rs9469965	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469966	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469967	0.81[AMR][1000 genomes]
rs9469969	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9469977	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469984	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469993	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9469999	0.83[AFR][1000 genomes]
rs9470004	0.86[AFR][1000 genomes]
rs9470008	0.86[AFR][1000 genomes]
rs9470011	0.86[AFR][1000 genomes]
rs9470012	0.86[AFR][1000 genomes]
rs9658064	0.84[AFR][1000 genomes]
rs9658065	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35228400-35250200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35228600-35248400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:35228600-35248800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:35228600-35253200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:35228800-35248800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:35228800-35248800	Weak transcription	Spleen	Spleen
7	chr6:35228800-35249000	Weak transcription	Fetal Intestine Large	intestine
8	chr6:35228800-35249000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:35228800-35251400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:35229000-35248800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:35229000-35248800	Weak transcription	Thymus	Thymus
12	chr6:35229000-35249000	Weak transcription	Liver	Liver
13	chr6:35229000-35250400	Weak transcription	Fetal Brain Male	brain
14	chr6:35229200-35248800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:35229200-35248800	Weak transcription	Dnd41	blood
16	chr6:35229200-35250200	Weak transcription	Pancreas	Pancrea
17	chr6:35231200-35248400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:35232200-35248600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:35232200-35248800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr6:35232400-35248800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:35232400-35250200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:35232600-35248400	Weak transcription	Fetal Lung	lung
23	chr6:35232600-35265200	Weak transcription	Stomach Mucosa	stomach
24	chr6:35232800-35248800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:35232800-35248800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:35232800-35249000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:35233600-35248800	Weak transcription	Primary B cells from cord blood	blood
28	chr6:35233800-35258400	Weak transcription	Small Intestine	intestine
29	chr6:35236200-35248800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:35236200-35248800	Weak transcription	GM12878-XiMat	blood
31	chr6:35236400-35249000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr6:35237600-35248600	Weak transcription	Fetal Thymus	thymus
33	chr6:35237800-35253400	Weak transcription	Gastric	stomach
34	chr6:35237800-35264800	Weak transcription	K562	blood
35	chr6:35239000-35248800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr6:35240400-35248800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:35240600-35248600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr6:35242400-35248800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:35242400-35248800	Weak transcription	Fetal Intestine Small	intestine
40	chr6:35242600-35248800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:35243200-35248400	Weak transcription	NHDF-Ad	bronchial
42	chr6:35243200-35250000	Weak transcription	HSMMtube	muscle
43	chr6:35243200-35250200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:35243400-35248400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:35243400-35248400	Weak transcription	Lung	lung
46	chr6:35243400-35248400	Weak transcription	Right Atrium	heart
47	chr6:35243400-35248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr6:35243400-35248800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:35243400-35248800	Weak transcription	Esophagus	oesophagus
50	chr6:35243400-35248800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links