Variant report

Variant	rs12332985
Chromosome Location	chr6:35278924-35278925
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35275753..35280306-chr6:35283312..35286403,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000023892	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16868709	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs16874062	0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs16874262	0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6906117	0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9296145	0.86[YRI][hapmap]
rs9462066	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9462070	0.86[YRI][hapmap]
rs9462076	0.98[AFR][1000 genomes]
rs9469965	0.92[AMR][1000 genomes]
rs9469966	0.92[AMR][1000 genomes]
rs9469969	0.85[AMR][1000 genomes]
rs9469977	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9469983	0.85[YRI][hapmap]
rs9469984	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9469987	0.86[YRI][hapmap]
rs9469993	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469999	0.93[AFR][1000 genomes]
rs9470003	0.86[YRI][hapmap]
rs9470004	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs9470008	0.98[AFR][1000 genomes]
rs9470011	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs9470012	0.98[AFR][1000 genomes]
rs9658064	0.95[AFR][1000 genomes]
rs9658065	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35265200-35285600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:35266600-35279800	Weak transcription	Fetal Stomach	stomach
3	chr6:35271400-35279800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:35271400-35285000	Weak transcription	HepG2	liver
5	chr6:35271600-35285200	Weak transcription	Fetal Intestine Large	intestine
6	chr6:35271600-35285600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:35272400-35279200	Weak transcription	Adipose Nuclei	Adipose
8	chr6:35272400-35284600	Weak transcription	HMEC	breast
9	chr6:35272400-35285400	Weak transcription	Gastric	stomach
10	chr6:35272600-35280200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:35275000-35279200	Enhancers	Placenta	Placenta
12	chr6:35276000-35293800	Weak transcription	K562	blood
13	chr6:35276600-35279200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:35276800-35279000	Genic enhancers	Thymus	Thymus
15	chr6:35276800-35279200	Genic enhancers	Primary B cells from peripheral blood	blood
16	chr6:35276800-35279200	Genic enhancers	Fetal Thymus	thymus
17	chr6:35276800-35279800	Genic enhancers	Dnd41	blood
18	chr6:35276800-35280600	Strong transcription	Fetal Intestine Small	intestine
19	chr6:35276800-35281000	Strong transcription	NHEK	skin
20	chr6:35277000-35279000	Weak transcription	Lung	lung
21	chr6:35277000-35281600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:35277000-35285400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:35277400-35280600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:35277600-35279400	Genic enhancers	Primary monocytes fromperipheralblood	blood
25	chr6:35277600-35280600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:35277800-35279000	Genic enhancers	GM12878-XiMat	blood
27	chr6:35277800-35279400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr6:35277800-35280000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr6:35278000-35279000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
30	chr6:35278000-35279400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:35278000-35279400	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:35278000-35281000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:35278200-35279000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:35278200-35279000	Strong transcription	Esophagus	oesophagus
35	chr6:35278200-35279000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr6:35278200-35279200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:35278200-35279400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr6:35278200-35279800	Flanking Active TSS	Primary T cells from cord blood	blood
39	chr6:35278200-35280200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr6:35278200-35280600	Enhancers	Fetal Muscle Leg	muscle
41	chr6:35278200-35285600	Weak transcription	Colonic Mucosa	Colon
42	chr6:35278400-35279200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
43	chr6:35278400-35280400	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
44	chr6:35278400-35280400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr6:35278400-35280600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:35278600-35279000	Enhancers	Small Intestine	intestine
47	chr6:35278600-35279200	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr6:35278600-35279600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:35278600-35279800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr6:35278600-35280200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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