Variant report

Variant	rs16868709
Chromosome Location	chr6:35354471-35354472
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35349215..35351614-chr6:35353846..35356843,2	MCF-7	breast:
2	chr6:35352372..35354969-chr6:35356317..35359445,3	K562	blood:
3	chr6:35353907..35355834-chr6:35387583..35389412,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12332985	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs16868695	0.86[ASW][hapmap]
rs16874062	0.84[ASW][hapmap];0.92[LWK][hapmap];0.80[MKK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs16874262	0.84[ASW][hapmap];0.94[LWK][hapmap];0.80[MKK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes]
rs6906117	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs6938138	0.86[ASW][hapmap]
rs9296145	0.86[YRI][hapmap]
rs9462066	0.86[AFR][1000 genomes]
rs9462070	0.86[YRI][hapmap]
rs9462076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462078	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs9469956	0.83[AMR][1000 genomes]
rs9469977	0.83[AFR][1000 genomes]
rs9469983	0.86[YRI][hapmap]
rs9469984	0.91[AFR][1000 genomes]
rs9469987	0.86[YRI][hapmap]
rs9469993	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9469999	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9470003	0.86[YRI][hapmap]
rs9470004	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470011	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9658064	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9658065	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35338200-35356400	Weak transcription	Pancreas	Pancrea
2	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:35338600-35359400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:35339200-35356600	Weak transcription	Esophagus	oesophagus
5	chr6:35339600-35357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:35339800-35354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:35340000-35357600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:35340600-35359400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:35341800-35354600	Weak transcription	NHEK	skin
10	chr6:35344400-35358000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:35345200-35355800	Weak transcription	GM12878-XiMat	blood
12	chr6:35345600-35378400	Weak transcription	Aorta	Aorta
13	chr6:35346200-35359200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:35346200-35359800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:35347400-35357600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:35347600-35359200	Weak transcription	Brain Angular Gyrus	brain
17	chr6:35347600-35359200	Weak transcription	Brain Substantia Nigra	brain
18	chr6:35349600-35359200	Weak transcription	Gastric	stomach
19	chr6:35350200-35358000	Weak transcription	Adipose Nuclei	Adipose
20	chr6:35350200-35359400	Weak transcription	Liver	Liver
21	chr6:35350400-35358400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:35351000-35355800	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:35351000-35356000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:35351000-35357800	Weak transcription	Right Atrium	heart
25	chr6:35351000-35359000	Weak transcription	Primary T cells from cord blood	blood
26	chr6:35351000-35359200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:35351000-35359400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:35351000-35360200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr6:35351000-35360800	Weak transcription	Primary B cells from cord blood	blood
30	chr6:35351000-35363400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:35351200-35356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:35351200-35357600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:35351200-35357800	Weak transcription	Dnd41	blood
34	chr6:35351200-35359200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:35351200-35359400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:35351200-35359600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:35351400-35355800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr6:35353400-35354600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:35353400-35354600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:35353400-35354800	Enhancers	Ovary	ovary
41	chr6:35353400-35355000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr6:35353400-35355000	Enhancers	Fetal Intestine Large	intestine
43	chr6:35353400-35355000	Enhancers	Fetal Muscle Trunk	muscle
44	chr6:35353400-35355000	Enhancers	Right Ventricle	heart
45	chr6:35353400-35355000	Enhancers	Osteobl	bone
46	chr6:35353400-35355200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:35353400-35355200	Enhancers	Fetal Muscle Leg	muscle
48	chr6:35353400-35355200	Enhancers	K562	blood
49	chr6:35353400-35355200	Enhancers	NH-A	brain
50	chr6:35353600-35354600	Enhancers	Colon Smooth Muscle	Colon

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