Variant report

Variant	rs9462078
Chromosome Location	chr6:35357974-35357975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35357119..35359280-chr6:35381756..35383497,2	MCF-7	breast:
2	chr6:35348461..35351306-chr6:35356739..35359433,2	MCF-7	breast:
3	chr6:35327015..35329027-chr6:35357004..35359462,2	K562	blood:
4	chr6:35352372..35354969-chr6:35356317..35359445,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16868709	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs61534122	0.86[AFR][1000 genomes]
rs9296145	0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs9462061	0.86[LWK][hapmap]
rs9462070	0.81[YRI][hapmap];0.88[AFR][1000 genomes]
rs9462076	0.83[AMR][1000 genomes]
rs9469983	0.86[LWK][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs9469987	0.81[YRI][hapmap];0.88[AFR][1000 genomes]
rs9470003	0.81[YRI][hapmap];0.88[AFR][1000 genomes]
rs9470004	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs9470005	0.88[AFR][1000 genomes]
rs9470008	0.83[AMR][1000 genomes]
rs9470011	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs9470012	0.83[AMR][1000 genomes]
rs9658064	0.83[AMR][1000 genomes]
rs9658065	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:35338600-35359400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:35340600-35359400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:35344400-35358000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:35345600-35378400	Weak transcription	Aorta	Aorta
6	chr6:35346200-35359200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:35346200-35359800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:35347600-35359200	Weak transcription	Brain Angular Gyrus	brain
9	chr6:35347600-35359200	Weak transcription	Brain Substantia Nigra	brain
10	chr6:35349600-35359200	Weak transcription	Gastric	stomach
11	chr6:35350200-35358000	Weak transcription	Adipose Nuclei	Adipose
12	chr6:35350200-35359400	Weak transcription	Liver	Liver
13	chr6:35350400-35358400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:35351000-35359000	Weak transcription	Primary T cells from cord blood	blood
15	chr6:35351000-35359200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:35351000-35359400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:35351000-35360200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:35351000-35360800	Weak transcription	Primary B cells from cord blood	blood
19	chr6:35351000-35363400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:35351200-35359200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:35351200-35359400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:35351200-35359600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:35353600-35358000	Enhancers	Placenta	Placenta
24	chr6:35353800-35359000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:35354000-35358400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr6:35354000-35358400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:35354000-35358600	Weak transcription	NHLF	lung
28	chr6:35354000-35359000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:35354000-35359200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:35354000-35359200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:35354000-35359200	Weak transcription	Fetal Lung	lung
32	chr6:35354000-35359200	Weak transcription	HSMMtube	muscle
33	chr6:35354000-35359400	Weak transcription	Left Ventricle	heart
34	chr6:35354000-35359600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:35354000-35359600	Weak transcription	Fetal Heart	heart
36	chr6:35354000-35359600	Weak transcription	Psoas Muscle	Psoas
37	chr6:35354000-35359800	Weak transcription	Fetal Stomach	stomach
38	chr6:35354000-35360800	Weak transcription	Fetal Thymus	thymus
39	chr6:35354000-35372400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr6:35354200-35359200	Weak transcription	NHDF-Ad	bronchial
41	chr6:35354400-35359800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:35354600-35358600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:35354600-35359200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:35354600-35359200	Weak transcription	Colon Smooth Muscle	Colon
45	chr6:35354800-35359200	Weak transcription	Brain Anterior Caudate	brain
46	chr6:35355000-35359400	Weak transcription	Right Ventricle	heart
47	chr6:35355000-35359600	Weak transcription	HepG2	liver
48	chr6:35355000-35359800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr6:35355000-35364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr6:35355200-35358000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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