Variant report

Variant	rs61534122
Chromosome Location	chr6:35269153-35269154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35267694..35270877-chr6:35436022..35437684,3	K562	blood:
2	chr6:35260730..35269335-chr6:35433870..35444063,22	MCF-7	breast:
3	chr6:35267234..35269262-chr6:35289191..35290827,2	K562	blood:
4	chr6:35267721..35269986-chr6:35284716..35286243,2	K562	blood:
5	chr6:35269040..35271053-chr6:35276733..35278260,2	K562	blood:

Variant related genes	Relation type
ENSG00000023892	Chromatin interaction
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16874262	0.81[AFR][1000 genomes]
rs57127611	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60812576	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9296145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462061	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462078	0.86[AFR][1000 genomes]
rs9469952	1.00[AMR][1000 genomes]
rs9469962	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469973	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469974	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469984	0.84[AFR][1000 genomes]
rs9469987	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470003	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35261200-35270400	Weak transcription	Hela-S3	cervix
2	chr6:35263000-35270400	Weak transcription	A549	lung
3	chr6:35263200-35270600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:35263200-35270600	Weak transcription	NHDF-Ad	bronchial
5	chr6:35263400-35270200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:35264600-35270400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:35264800-35269400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr6:35265000-35269200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:35265000-35269400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr6:35265200-35270200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:35265200-35270200	Weak transcription	Osteobl	bone
12	chr6:35265200-35270600	Weak transcription	HSMM	muscle
13	chr6:35265200-35285600	Weak transcription	Brain Substantia Nigra	brain
14	chr6:35265400-35270400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:35265400-35272200	Weak transcription	Fetal Brain Female	brain
16	chr6:35265800-35270400	Weak transcription	Psoas Muscle	Psoas
17	chr6:35266000-35269800	Weak transcription	Lung	lung
18	chr6:35266000-35270200	Weak transcription	Right Atrium	heart
19	chr6:35266000-35270200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:35266000-35270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:35266000-35270400	Weak transcription	NH-A	brain
22	chr6:35266000-35270800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:35266000-35271000	Weak transcription	Left Ventricle	heart
24	chr6:35266000-35271000	Weak transcription	Right Ventricle	heart
25	chr6:35266000-35272000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:35266200-35269200	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:35266200-35269400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:35266200-35269400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr6:35266200-35270000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:35266200-35270400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr6:35266200-35270400	Weak transcription	Fetal Heart	heart
32	chr6:35266200-35270600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:35266200-35270800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:35266400-35269200	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr6:35266400-35269200	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
36	chr6:35266400-35269200	Enhancers	Stomach Mucosa	stomach
37	chr6:35266400-35269400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
38	chr6:35266400-35270200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:35266400-35270400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:35266400-35270400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:35266400-35270400	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr6:35266400-35270600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:35266400-35270600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr6:35266400-35270600	Weak transcription	HUVEC	blood vessel
45	chr6:35266600-35269200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr6:35266600-35269400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:35266600-35269400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr6:35266600-35269600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr6:35266600-35270000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr6:35266600-35270600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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