Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:35168653..35170985-chr6:35173621..35175811,2	MCF-7	breast:
2	chr6:34384595..34386120-chr6:35175075..35178043,2	K562	blood:
3	chr6:35134724..35136511-chr6:35174942..35176487,2	K562	blood:
4	chr6:35175233..35177810-chr6:35181821..35183901,3	MCF-7	breast:
5	chr6:35116601..35118172-chr6:35173986..35176309,2	MCF-7	breast:
6	chr6:35078166..35080543-chr6:35174999..35176550,2	K562	blood:

Variant related genes	Relation type
ENSG00000146197	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16874062	0.83[LWK][hapmap]
rs16874262	0.83[LWK][hapmap]
rs57127611	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60812576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61534122	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6906117	0.85[YRI][hapmap]
rs9296145	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9296146	0.89[MKK][hapmap];0.83[YRI][hapmap]
rs9462070	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9462078	0.86[LWK][hapmap]
rs9469952	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469962	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469965	0.83[AFR][1000 genomes]
rs9469966	0.83[AFR][1000 genomes]
rs9469969	0.83[AFR][1000 genomes]
rs9469973	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469974	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469977	0.85[YRI][hapmap]
rs9469983	1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9469987	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470003	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470005	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9470017	0.83[YRI][hapmap]
rs9658112	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428128	chr6:35150524-35225843	Bivalent Enhancer Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35168200-35176200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:35171400-35177600	Weak transcription	Fetal Heart	heart
3	chr6:35174600-35180600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:35175000-35176200	Weak transcription	Osteobl	bone

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