Variant report

Variant	rs7770619
Chromosome Location	chr6:35350042-35350043
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35348461..35351306-chr6:35356739..35359433,2	MCF-7	breast:
2	chr6:35349215..35351614-chr6:35353846..35356843,2	MCF-7	breast:
3	chr6:35343876..35345476-chr6:35348637..35350211,2	K562	blood:
4	chr6:34758211..34761110-chr6:35347870..35350820,2	MCF-7	breast:
5	chr6:35342473..35346671-chr6:35347993..35350211,4	K562	blood:

Variant related genes	Relation type
ENSG00000065060	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11545923	1.00[CHD][hapmap]
rs16868695	1.00[CHD][hapmap]
rs16873902	1.00[CHD][hapmap]
rs16874216	1.00[CHD][hapmap]
rs16876572	1.00[CHD][hapmap]
rs17511800	1.00[CHD][hapmap]
rs1929848	1.00[CHB][hapmap]
rs2395617	1.00[CHB][hapmap]
rs41271257	1.00[ASN][1000 genomes]
rs45440096	1.00[ASN][1000 genomes]
rs45593535	1.00[ASN][1000 genomes]
rs57648364	0.87[EUR][1000 genomes]
rs59072066	0.93[AMR][1000 genomes]
rs59137976	0.87[EUR][1000 genomes]
rs59875209	0.93[AMR][1000 genomes]
rs60889636	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6906237	1.00[GIH][hapmap]
rs6919534	1.00[CHB][hapmap]
rs6937124	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6938138	1.00[CHD][hapmap]
rs729925	1.00[CHB][hapmap]
rs734538	1.00[CHB][hapmap]
rs73746404	0.85[AMR][1000 genomes]
rs743965	1.00[CHD][hapmap]
rs763155	1.00[CHB][hapmap]
rs763157	1.00[CHB][hapmap]
rs7742865	1.00[ASN][1000 genomes]
rs7751726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[AMR][1000 genomes]
rs7769719	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296149	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394282	1.00[CHB][hapmap]
rs9462081	1.00[CHB][hapmap]
rs9658077	0.88[ASW][hapmap];1.00[CHB][hapmap]
rs9658079	1.00[CHD][hapmap]
rs9658081	0.88[ASW][hapmap];1.00[CHB][hapmap]
rs9658085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658093	0.85[AMR][1000 genomes]
rs9658094	0.85[AMR][1000 genomes]
rs9658111	0.83[ASN][1000 genomes]
rs9658119	1.00[CHB][hapmap]
rs9658135	1.00[CHD][hapmap]
rs9658149	1.00[CHD][hapmap]
rs9658151	1.00[CHB][hapmap]
rs9942465	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:35331200-35350800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:35338200-35356400	Weak transcription	Pancreas	Pancrea
4	chr6:35338400-35350800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:35338600-35359400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:35338800-35350600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:35338800-35353400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:35339000-35351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:35339200-35350200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:35339200-35350600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:35339200-35353400	Weak transcription	Left Ventricle	heart
13	chr6:35339200-35353400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:35339200-35356600	Weak transcription	Esophagus	oesophagus
15	chr6:35339400-35350800	Weak transcription	Right Atrium	heart
16	chr6:35339400-35353600	Weak transcription	Small Intestine	intestine
17	chr6:35339600-35350800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:35339600-35350800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:35339600-35350800	Weak transcription	Colonic Mucosa	Colon
20	chr6:35339600-35353400	Weak transcription	HMEC	breast
21	chr6:35339600-35353600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:35339600-35357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:35339800-35350400	Weak transcription	Right Ventricle	heart
24	chr6:35339800-35354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:35340000-35350400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:35340000-35350600	Weak transcription	Fetal Intestine Large	intestine
27	chr6:35340000-35357600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:35340400-35350800	Weak transcription	Spleen	Spleen
29	chr6:35340600-35359400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:35341800-35354600	Weak transcription	NHEK	skin
31	chr6:35342000-35353400	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:35344400-35358000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:35345000-35351000	Strong transcription	Primary T cells from cord blood	blood
34	chr6:35345200-35353600	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:35345200-35355800	Weak transcription	GM12878-XiMat	blood
36	chr6:35345600-35350600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:35345600-35353400	Weak transcription	Fetal Stomach	stomach
38	chr6:35345600-35353400	Weak transcription	HepG2	liver
39	chr6:35345600-35353600	Weak transcription	Fetal Lung	lung
40	chr6:35345600-35353800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:35345600-35378400	Weak transcription	Aorta	Aorta
42	chr6:35345800-35353400	Weak transcription	Ovary	ovary
43	chr6:35346200-35359200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:35346200-35359800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:35346400-35353600	Weak transcription	Brain Anterior Caudate	brain
46	chr6:35346600-35350600	Strong transcription	Primary B cells from peripheral blood	blood
47	chr6:35346600-35350800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr6:35346600-35353400	Weak transcription	Brain Hippocampus Middle	brain
49	chr6:35346800-35350400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr6:35346800-35353400	Weak transcription	Brain Inferior Temporal Lobe	brain

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