Variant report

Variant	rs59875209
Chromosome Location	chr6:35372186-35372187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35327410..35329043-chr6:35371700..35373772,2	MCF-7	breast:
2	chr6:35364744..35367159-chr6:35371168..35373202,2	MCF-7	breast:
3	chr6:35307588..35310210-chr6:35369138..35372365,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56748507	0.83[ASN][1000 genomes]
rs59072066	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59188072	0.83[ASN][1000 genomes]
rs60838008	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73413756	0.83[ASN][1000 genomes]
rs73746414	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7740674	0.83[ASN][1000 genomes]
rs7751726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769719	0.83[ASN][1000 genomes]
rs7770619	0.93[AMR][1000 genomes]
rs9296151	0.85[EUR][1000 genomes]
rs9296153	0.83[ASN][1000 genomes]
rs9462081	0.83[ASN][1000 genomes]
rs9470023	0.83[ASN][1000 genomes]
rs9470025	0.83[ASN][1000 genomes]
rs9470026	1.00[ASN][1000 genomes]
rs9658111	0.83[ASN][1000 genomes]
rs9658151	0.83[ASN][1000 genomes]
rs9658165	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9658180	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:35345600-35378400	Weak transcription	Aorta	Aorta
3	chr6:35354000-35372400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:35359800-35378800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:35360000-35378200	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:35360000-35378400	Weak transcription	HSMMtube	muscle
7	chr6:35360000-35379000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:35360000-35382600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:35360400-35372200	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:35360600-35372400	Weak transcription	Brain Anterior Caudate	brain
11	chr6:35360600-35378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:35361000-35378000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:35361000-35378600	Weak transcription	Adipose Nuclei	Adipose
14	chr6:35361000-35378600	Weak transcription	NHLF	lung
15	chr6:35361000-35378800	Weak transcription	Psoas Muscle	Psoas
16	chr6:35361200-35376200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:35361200-35378600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:35361800-35385800	Weak transcription	Small Intestine	intestine
19	chr6:35362000-35378000	Weak transcription	Spleen	Spleen
20	chr6:35362200-35378400	Weak transcription	Primary B cells from cord blood	blood
21	chr6:35362200-35378400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:35362200-35380000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:35363400-35378200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:35364000-35378000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr6:35365400-35375800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:35365400-35378600	Weak transcription	NHDF-Ad	bronchial
27	chr6:35365800-35377800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:35365800-35378600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr6:35365800-35378600	Weak transcription	Ovary	ovary
30	chr6:35366200-35378000	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:35366200-35386800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:35366400-35382800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:35366600-35376600	Weak transcription	K562	blood
34	chr6:35366600-35378600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:35367800-35372800	Strong transcription	Primary T cells from cord blood	blood
36	chr6:35367800-35378600	Weak transcription	Thymus	Thymus
37	chr6:35368000-35372600	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr6:35369200-35378600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:35369200-35378800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:35369200-35379000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:35369200-35382600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:35369400-35382600	Weak transcription	NH-A	brain
43	chr6:35369600-35372400	Enhancers	Right Ventricle	heart
44	chr6:35369600-35372600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:35369600-35378000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:35369600-35378200	Weak transcription	Esophagus	oesophagus
47	chr6:35369800-35372600	Genic enhancers	Placenta	Placenta
48	chr6:35369800-35374000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:35369800-35377600	Weak transcription	Osteobl	bone
50	chr6:35370200-35378200	Weak transcription	Primary T cells fromperipheralblood	blood

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