Variant report

Variant	rs9658165
Chromosome Location	chr6:35393589-35393590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35369456..35371995-chr6:35391240..35394220,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56748507	0.83[ASN][1000 genomes]
rs59072066	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59188072	0.83[ASN][1000 genomes]
rs59875209	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60838008	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73413756	0.83[ASN][1000 genomes]
rs73746404	0.91[AMR][1000 genomes]
rs73746414	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740674	0.83[ASN][1000 genomes]
rs7751726	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7769719	0.83[ASN][1000 genomes]
rs9296153	0.83[ASN][1000 genomes]
rs9462081	0.83[ASN][1000 genomes]
rs9470023	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9470025	0.83[ASN][1000 genomes]
rs9470026	1.00[ASN][1000 genomes]
rs9658093	0.91[AMR][1000 genomes]
rs9658094	0.91[AMR][1000 genomes]
rs9658111	0.83[ASN][1000 genomes]
rs9658151	0.83[ASN][1000 genomes]
rs9658180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
8	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
9	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
10	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35377800-35395000	Weak transcription	K562	blood
2	chr6:35383000-35394600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:35383000-35396800	Weak transcription	Right Atrium	heart
4	chr6:35383400-35394800	Weak transcription	Fetal Kidney	kidney
5	chr6:35383400-35396600	Weak transcription	Stomach Mucosa	stomach
6	chr6:35383600-35402600	Weak transcription	Fetal Heart	heart
7	chr6:35387400-35395200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:35387600-35394000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:35387600-35394800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:35387600-35395200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:35387600-35395200	Strong transcription	Stomach Smooth Muscle	stomach
12	chr6:35387800-35394600	Strong transcription	Fetal Stomach	stomach
13	chr6:35387800-35396000	Strong transcription	Fetal Intestine Small	intestine
14	chr6:35388000-35394200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:35388000-35395600	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr6:35388000-35396000	Strong transcription	Fetal Muscle Leg	muscle
17	chr6:35388200-35393600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:35388200-35395200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr6:35389200-35395200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr6:35389200-35395400	Strong transcription	Fetal Intestine Large	intestine
21	chr6:35389200-35396000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:35389400-35394600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:35389400-35394800	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:35389400-35394800	Strong transcription	Brain Substantia Nigra	brain
25	chr6:35389400-35395000	Strong transcription	Rectal Smooth Muscle	rectum
26	chr6:35389400-35395200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:35389400-35395200	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:35389400-35395600	Strong transcription	Primary T cells from cord blood	blood
29	chr6:35389400-35395600	Strong transcription	Brain Cingulate Gyrus	brain
30	chr6:35389400-35395600	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:35389400-35395800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr6:35389600-35394600	Strong transcription	Fetal Lung	lung
33	chr6:35389600-35394600	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr6:35389600-35395200	Strong transcription	Left Ventricle	heart
35	chr6:35389600-35395400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr6:35389600-35395600	Strong transcription	Brain Anterior Caudate	brain
37	chr6:35389600-35395600	Strong transcription	Brain Hippocampus Middle	brain
38	chr6:35389600-35396200	Strong transcription	Gastric	stomach
39	chr6:35390400-35395200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:35390400-35396000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr6:35390600-35393600	Weak transcription	GM12878-XiMat	blood
42	chr6:35391400-35394600	Strong transcription	Aorta	Aorta
43	chr6:35391400-35395000	Strong transcription	Fetal Brain Female	brain
44	chr6:35391400-35395000	Strong transcription	Pancreas	Pancrea
45	chr6:35391400-35395600	Strong transcription	Colonic Mucosa	Colon
46	chr6:35391400-35396000	Strong transcription	Thymus	Thymus
47	chr6:35391400-35396400	Strong transcription	Right Ventricle	heart
48	chr6:35391600-35394600	Strong transcription	Brain Angular Gyrus	brain
49	chr6:35391600-35394800	Strong transcription	Liver	Liver
50	chr6:35391600-35395000	Strong transcription	Duodenum Smooth Muscle	Duodenum

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