Variant report

Variant	rs56748507
Chromosome Location	chr6:35401608-35401609
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35395055..35396641-chr6:35399730..35402095,2	MCF-7	breast:
2	chr6:35390023..35392138-chr6:35401114..35403193,2	K562	blood:
3	chr6:35401564..35403389-chr6:35434322..35438039,3	K562	blood:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs59072066	0.83[ASN][1000 genomes]
rs59188072	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59875209	0.83[ASN][1000 genomes]
rs60838008	0.83[ASN][1000 genomes]
rs73413756	1.00[ASN][1000 genomes]
rs73746414	0.83[ASN][1000 genomes]
rs7740674	1.00[ASN][1000 genomes]
rs7749479	0.86[ASN][1000 genomes]
rs7751726	0.83[ASN][1000 genomes]
rs9296153	1.00[ASN][1000 genomes]
rs9462081	1.00[ASN][1000 genomes]
rs9470023	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470025	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470026	0.83[ASN][1000 genomes]
rs9658151	1.00[ASN][1000 genomes]
rs9658165	0.83[ASN][1000 genomes]
rs9658180	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
8	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
9	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
10	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
11	nsv885800	chr6:35394247-35406153	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35383600-35402600	Weak transcription	Fetal Heart	heart
2	chr6:35392600-35402800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:35394600-35403000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:35395200-35402200	Weak transcription	Left Ventricle	heart
5	chr6:35395200-35404400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:35395400-35402200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:35395600-35402800	Weak transcription	Psoas Muscle	Psoas
8	chr6:35395800-35403000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:35395800-35403200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:35396400-35402200	Weak transcription	Right Ventricle	heart
11	chr6:35397200-35403400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:35397400-35403000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:35397400-35403600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:35397600-35403200	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:35398200-35402800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:35398400-35404400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:35400200-35401800	Weak transcription	Colonic Mucosa	Colon
18	chr6:35400200-35402800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:35400200-35403400	Weak transcription	Small Intestine	intestine
20	chr6:35400400-35401800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:35400400-35402200	Weak transcription	Adipose Nuclei	Adipose
22	chr6:35400400-35402200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:35400400-35402800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:35400400-35402800	Weak transcription	Liver	Liver
25	chr6:35400400-35402800	Weak transcription	Fetal Intestine Large	intestine
26	chr6:35400400-35403000	Weak transcription	Spleen	Spleen
27	chr6:35400600-35402000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:35400600-35402400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:35400600-35413800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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