Variant report

Variant	rs9470026
Chromosome Location	chr6:35413567-35413568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35413046..35416291-chr6:35417429..35420462,4	K562	blood:
2	chr6:35412651..35414194-chr6:35442637..35444257,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56748507	0.83[ASN][1000 genomes]
rs59072066	1.00[ASN][1000 genomes]
rs59188072	0.83[ASN][1000 genomes]
rs59875209	1.00[ASN][1000 genomes]
rs60838008	1.00[ASN][1000 genomes]
rs73413756	0.83[ASN][1000 genomes]
rs73746414	1.00[ASN][1000 genomes]
rs7740674	0.83[ASN][1000 genomes]
rs7751726	1.00[ASN][1000 genomes]
rs7769719	0.83[ASN][1000 genomes]
rs9296153	0.83[ASN][1000 genomes]
rs9462081	0.83[ASN][1000 genomes]
rs9470023	0.83[ASN][1000 genomes]
rs9470025	0.83[ASN][1000 genomes]
rs9658111	0.83[ASN][1000 genomes]
rs9658151	0.83[ASN][1000 genomes]
rs9658165	1.00[ASN][1000 genomes]
rs9658180	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
5	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
6	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
7	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
8	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35400600-35413800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:35403400-35419400	Weak transcription	Right Atrium	heart
3	chr6:35404800-35413800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:35406800-35419200	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:35411200-35419600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:35411400-35413600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:35411400-35413600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:35411400-35413600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:35411400-35413600	Weak transcription	Esophagus	oesophagus
10	chr6:35411400-35415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:35411400-35419400	Weak transcription	NHEK	skin
12	chr6:35411600-35413600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:35411600-35419400	Weak transcription	HMEC	breast
14	chr6:35411800-35419200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:35412800-35414000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr6:35413200-35413800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:35413400-35413800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:35413400-35414000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
19	chr6:35413400-35414000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:35413400-35414000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:35413400-35414000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:35413400-35414000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr6:35413400-35414200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr6:35413400-35414200	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links