Variant report

Variant	rs7769719
Chromosome Location	chr6:35362525-35362526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35359555..35363519-chr6:35435145..35438155,4	K562	blood:
2	chr6:35360599..35362739-chr6:35363627..35365707,2	K562	blood:
3	chr6:35360426..35363519-chr6:35436261..35438354,3	K562	blood:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs41271257	0.83[ASN][1000 genomes]
rs45440096	0.83[ASN][1000 genomes]
rs45593535	0.83[ASN][1000 genomes]
rs59072066	0.83[ASN][1000 genomes]
rs59875209	0.83[ASN][1000 genomes]
rs60838008	0.83[ASN][1000 genomes]
rs60889636	0.83[ASN][1000 genomes]
rs6906237	0.82[EUR][1000 genomes]
rs6937124	0.83[ASN][1000 genomes]
rs6942357	0.82[EUR][1000 genomes]
rs73746414	0.83[ASN][1000 genomes]
rs7742865	0.83[ASN][1000 genomes]
rs7749479	0.86[ASN][1000 genomes]
rs7751726	0.83[ASN][1000 genomes]
rs7770619	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296149	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9470026	0.83[ASN][1000 genomes]
rs9658085	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9658111	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658165	0.83[ASN][1000 genomes]
rs9658180	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:35345600-35378400	Weak transcription	Aorta	Aorta
3	chr6:35351000-35363400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:35354000-35372400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:35355000-35364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:35357600-35362800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:35357800-35362800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:35358000-35362800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:35358000-35363400	Enhancers	HUVEC	blood vessel
10	chr6:35358400-35362800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:35358400-35363000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:35359200-35362600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:35359400-35363000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr6:35359400-35363000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:35359400-35363400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:35359400-35363600	Enhancers	Left Ventricle	heart
17	chr6:35359400-35363600	Enhancers	Ovary	ovary
18	chr6:35359600-35369200	Weak transcription	Fetal Kidney	kidney
19	chr6:35359800-35363000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:35359800-35363000	Genic enhancers	Placenta	Placenta
21	chr6:35359800-35363000	Enhancers	K562	blood
22	chr6:35359800-35364600	Weak transcription	NHDF-Ad	bronchial
23	chr6:35359800-35378800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:35360000-35364600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:35360000-35366400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr6:35360000-35378200	Weak transcription	Colon Smooth Muscle	Colon
27	chr6:35360000-35378400	Weak transcription	HSMMtube	muscle
28	chr6:35360000-35379000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:35360000-35382600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:35360200-35363200	Enhancers	Primary B cells from peripheral blood	blood
31	chr6:35360400-35363400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr6:35360400-35372000	Weak transcription	Brain Angular Gyrus	brain
33	chr6:35360400-35372200	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:35360600-35362600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:35360600-35365200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:35360600-35372400	Weak transcription	Brain Anterior Caudate	brain
37	chr6:35360600-35378600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:35360800-35362800	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr6:35360800-35363000	Enhancers	Fetal Thymus	thymus
40	chr6:35360800-35364600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr6:35360800-35367800	Weak transcription	Liver	Liver
42	chr6:35361000-35362800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr6:35361000-35364200	Weak transcription	Fetal Intestine Small	intestine
44	chr6:35361000-35365000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:35361000-35365000	Weak transcription	Fetal Stomach	stomach
46	chr6:35361000-35365000	Weak transcription	Right Atrium	heart
47	chr6:35361000-35365400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:35361000-35378000	Weak transcription	Stomach Smooth Muscle	stomach
49	chr6:35361000-35378600	Weak transcription	Adipose Nuclei	Adipose
50	chr6:35361000-35378600	Weak transcription	NHLF	lung

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