Variant report

Variant	rs60889636
Chromosome Location	chr6:35333754-35333755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35324260..35327105-chr6:35332379..35334972,3	K562	blood:
2	chr6:35328832..35330634-chr6:35333716..35335607,2	K562	blood:
3	chr6:35324260..35326770-chr6:35333364..35334972,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs41271257	1.00[ASN][1000 genomes]
rs45440096	1.00[ASN][1000 genomes]
rs45593535	1.00[ASN][1000 genomes]
rs57648364	0.81[EUR][1000 genomes]
rs59137976	0.81[EUR][1000 genomes]
rs6457815	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6937124	1.00[ASN][1000 genomes]
rs7742865	1.00[ASN][1000 genomes]
rs7769719	0.83[ASN][1000 genomes]
rs7770619	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296149	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658085	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658111	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	esv3473949	chr6:35332913-35334470	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3473950	chr6:35332913-35334470	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
2	chr6:35321000-35342400	Weak transcription	Fetal Kidney	kidney
3	chr6:35322000-35336000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:35325200-35335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:35325400-35335600	Weak transcription	Dnd41	blood
6	chr6:35326400-35335600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:35327000-35336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:35327600-35335800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:35328400-35344800	Weak transcription	Fetal Lung	lung
10	chr6:35328600-35335200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:35328800-35335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:35328800-35336000	Weak transcription	HMEC	breast
13	chr6:35329000-35335200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:35329000-35335200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:35329000-35335800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:35329000-35336600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:35329200-35334800	Weak transcription	Primary B cells from cord blood	blood
19	chr6:35329200-35335400	Weak transcription	Adipose Nuclei	Adipose
20	chr6:35329200-35335400	Weak transcription	Esophagus	oesophagus
21	chr6:35329200-35335400	Weak transcription	Spleen	Spleen
22	chr6:35329200-35335400	Weak transcription	HepG2	liver
23	chr6:35329200-35336000	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:35329200-35337800	Weak transcription	Ovary	ovary
25	chr6:35329600-35336000	Weak transcription	Pancreas	Pancrea
26	chr6:35329600-35338400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:35330400-35336000	Weak transcription	Primary T cells from cord blood	blood
28	chr6:35330600-35336000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:35331000-35335200	Weak transcription	NHLF	lung
30	chr6:35331000-35335800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:35331200-35335400	Weak transcription	NH-A	brain
32	chr6:35331200-35335600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:35331200-35336200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:35331200-35336400	Weak transcription	Thymus	Thymus
35	chr6:35331200-35337800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:35331200-35350800	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:35331400-35334600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:35331400-35334800	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:35331400-35335200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:35331400-35335200	Weak transcription	Lung	lung
41	chr6:35331400-35335400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:35331400-35335600	Weak transcription	Hela-S3	cervix
43	chr6:35331400-35335800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:35331400-35336000	Weak transcription	Brain Substantia Nigra	brain
45	chr6:35331400-35336000	Weak transcription	HUVEC	blood vessel
46	chr6:35331400-35337600	Weak transcription	Colonic Mucosa	Colon
47	chr6:35331400-35337800	Weak transcription	Aorta	Aorta
48	chr6:35331400-35337800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:35331400-35339200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr6:35331600-35333800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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