Variant report

Variant	rs57648364
Chromosome Location	chr6:35354838-35354839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35349215..35351614-chr6:35353846..35356843,2	MCF-7	breast:
2	chr6:35352372..35354969-chr6:35356317..35359445,3	K562	blood:
3	chr6:35334905..35337136-chr6:35354617..35357561,2	K562	blood:
4	chr6:35353907..35355834-chr6:35387583..35389412,2	K562	blood:
5	chr6:35343822..35346553-chr6:35354623..35356533,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1053046	0.89[ASN][1000 genomes]
rs11571504	0.82[ASN][1000 genomes]
rs59137976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60889636	0.81[EUR][1000 genomes]
rs60987797	0.95[ASN][1000 genomes]
rs6457815	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6901410	0.82[ASN][1000 genomes]
rs6902123	0.82[ASN][1000 genomes]
rs6906237	0.95[ASN][1000 genomes]
rs6919334	0.82[ASN][1000 genomes]
rs6922548	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7739752	0.82[ASN][1000 genomes]
rs7749664	0.89[ASN][1000 genomes]
rs7754871	0.82[ASN][1000 genomes]
rs7770619	0.87[EUR][1000 genomes]
rs9296148	0.82[ASN][1000 genomes]
rs9296149	0.91[EUR][1000 genomes]
rs9296151	0.89[ASN][1000 genomes]
rs9296152	0.89[ASN][1000 genomes]
rs9296154	0.89[ASN][1000 genomes]
rs9470001	0.82[ASN][1000 genomes]
rs9470007	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9658083	0.82[ASN][1000 genomes]
rs9658085	0.84[EUR][1000 genomes]
rs9658100	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35338200-35356400	Weak transcription	Pancreas	Pancrea
2	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:35338600-35359400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:35339200-35356600	Weak transcription	Esophagus	oesophagus
5	chr6:35339600-35357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:35340000-35357600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:35340600-35359400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:35344400-35358000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:35345200-35355800	Weak transcription	GM12878-XiMat	blood
10	chr6:35345600-35378400	Weak transcription	Aorta	Aorta
11	chr6:35346200-35359200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:35346200-35359800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:35347400-35357600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:35347600-35359200	Weak transcription	Brain Angular Gyrus	brain
15	chr6:35347600-35359200	Weak transcription	Brain Substantia Nigra	brain
16	chr6:35349600-35359200	Weak transcription	Gastric	stomach
17	chr6:35350200-35358000	Weak transcription	Adipose Nuclei	Adipose
18	chr6:35350200-35359400	Weak transcription	Liver	Liver
19	chr6:35350400-35358400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr6:35351000-35355800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:35351000-35356000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:35351000-35357800	Weak transcription	Right Atrium	heart
23	chr6:35351000-35359000	Weak transcription	Primary T cells from cord blood	blood
24	chr6:35351000-35359200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:35351000-35359400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:35351000-35360200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:35351000-35360800	Weak transcription	Primary B cells from cord blood	blood
28	chr6:35351000-35363400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:35351200-35356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:35351200-35357600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:35351200-35357800	Weak transcription	Dnd41	blood
32	chr6:35351200-35359200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:35351200-35359400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:35351200-35359600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:35351400-35355800	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr6:35353400-35355000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr6:35353400-35355000	Enhancers	Fetal Intestine Large	intestine
38	chr6:35353400-35355000	Enhancers	Fetal Muscle Trunk	muscle
39	chr6:35353400-35355000	Enhancers	Right Ventricle	heart
40	chr6:35353400-35355000	Enhancers	Osteobl	bone
41	chr6:35353400-35355200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:35353400-35355200	Enhancers	Fetal Muscle Leg	muscle
43	chr6:35353400-35355200	Enhancers	K562	blood
44	chr6:35353400-35355200	Enhancers	NH-A	brain
45	chr6:35353600-35355000	Genic enhancers	Fetal Intestine Small	intestine
46	chr6:35353600-35358000	Enhancers	Placenta	Placenta
47	chr6:35353800-35359000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:35354000-35355000	Enhancers	HepG2	liver
49	chr6:35354000-35355400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:35354000-35356000	Weak transcription	Lung	lung

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