Variant report

Variant	rs7749664
Chromosome Location	chr6:35397458-35397459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35380537..35383478-chr6:35394277..35398227,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1053046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57648364	0.89[ASN][1000 genomes]
rs59137976	0.89[ASN][1000 genomes]
rs60987797	0.84[ASN][1000 genomes]
rs6906237	0.95[ASN][1000 genomes]
rs6942357	0.84[AFR][1000 genomes]
rs7749479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9296151	0.89[ASN][1000 genomes]
rs9296152	0.89[ASN][1000 genomes]
rs9296154	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv602909	chr6:35356640-35423489	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv470812	chr6:35374461-35418118	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
7	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
8	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
9	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
10	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
11	nsv885800	chr6:35394247-35406153	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35383600-35402600	Weak transcription	Fetal Heart	heart
2	chr6:35392600-35402800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:35394600-35398200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr6:35394600-35403000	Weak transcription	Brain Germinal Matrix	brain
5	chr6:35395000-35398400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:35395000-35399800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:35395200-35402200	Weak transcription	Left Ventricle	heart
8	chr6:35395200-35404400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:35395400-35397800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:35395400-35398200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr6:35395400-35402200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:35395600-35402800	Weak transcription	Psoas Muscle	Psoas
13	chr6:35395800-35403000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:35395800-35403200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:35396000-35397600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:35396000-35397600	ZNF genes & repeats	Colonic Mucosa	Colon
17	chr6:35396200-35398000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:35396400-35397600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
19	chr6:35396400-35402200	Weak transcription	Right Ventricle	heart
20	chr6:35396600-35397600	ZNF genes & repeats	HSMM	muscle
21	chr6:35396600-35398400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:35396800-35398200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
23	chr6:35397000-35397600	ZNF genes & repeats	Brain Hippocampus Middle	brain
24	chr6:35397000-35397600	Weak transcription	Small Intestine	intestine
25	chr6:35397000-35399400	Weak transcription	Gastric	stomach
26	chr6:35397200-35397600	Weak transcription	HSMMtube	muscle
27	chr6:35397200-35397800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:35397200-35398000	Weak transcription	NHLF	lung
29	chr6:35397200-35403400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr6:35397400-35400000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:35397400-35400000	Weak transcription	Fetal Intestine Large	intestine
32	chr6:35397400-35400000	Weak transcription	HepG2	liver
33	chr6:35397400-35400000	Weak transcription	NHDF-Ad	bronchial
34	chr6:35397400-35403000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:35397400-35403600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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