Variant report

Variant	rs60987797
Chromosome Location	chr6:35331746-35331747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35330201..35332788-chr6:35338848..35341376,3	K562	blood:
2	chr6:35314045..35316677-chr6:35329976..35332837,2	K562	blood:
3	chr6:35322565..35326076-chr6:35326260..35332051,7	K562	blood:
4	chr6:35329439..35333357-chr6:35335770..35342563,9	K562	blood:
5	chr6:35322678..35326427-chr6:35328080..35332051,5	K562	blood:
6	chr17:4842730..4843409-chr6:35331145..35331881,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000108523	Chromatin interaction
ENSG00000108528	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1053046	0.84[ASN][1000 genomes]
rs57648364	0.95[ASN][1000 genomes]
rs59137976	0.95[ASN][1000 genomes]
rs6457815	0.81[AMR][1000 genomes]
rs6906237	0.90[ASN][1000 genomes]
rs7749664	0.84[ASN][1000 genomes]
rs9296151	0.95[ASN][1000 genomes]
rs9296152	0.95[ASN][1000 genomes]
rs9296154	0.95[ASN][1000 genomes]
rs9470000	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
2	chr6:35317400-35333000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:35321000-35342400	Weak transcription	Fetal Kidney	kidney
4	chr6:35322000-35336000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:35325200-35335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:35325400-35335600	Weak transcription	Dnd41	blood
7	chr6:35325600-35332000	Genic enhancers	Placenta	Placenta
8	chr6:35326000-35332000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:35326400-35335600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:35327000-35336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:35327600-35335800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:35328400-35332200	Enhancers	Fetal Heart	heart
13	chr6:35328400-35344800	Weak transcription	Fetal Lung	lung
14	chr6:35328600-35335200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:35328800-35335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:35328800-35336000	Weak transcription	HMEC	breast
17	chr6:35329000-35335200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:35329000-35335200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:35329000-35335800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:35329000-35336600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:35329200-35334800	Weak transcription	Primary B cells from cord blood	blood
23	chr6:35329200-35335400	Weak transcription	Adipose Nuclei	Adipose
24	chr6:35329200-35335400	Weak transcription	Esophagus	oesophagus
25	chr6:35329200-35335400	Weak transcription	Spleen	Spleen
26	chr6:35329200-35335400	Weak transcription	HepG2	liver
27	chr6:35329200-35336000	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:35329200-35337800	Weak transcription	Ovary	ovary
29	chr6:35329600-35336000	Weak transcription	Pancreas	Pancrea
30	chr6:35329600-35338400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:35330000-35332200	Enhancers	NHDF-Ad	bronchial
32	chr6:35330400-35336000	Weak transcription	Primary T cells from cord blood	blood
33	chr6:35330600-35332000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:35330600-35332200	Enhancers	Brain Angular Gyrus	brain
35	chr6:35330600-35336000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:35330800-35333600	Weak transcription	Primary B cells from peripheral blood	blood
37	chr6:35331000-35332000	Enhancers	HSMMtube	muscle
38	chr6:35331000-35333400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr6:35331000-35335200	Weak transcription	NHLF	lung
40	chr6:35331000-35335800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:35331200-35333600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:35331200-35335400	Weak transcription	NH-A	brain
43	chr6:35331200-35335600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:35331200-35336200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:35331200-35336400	Weak transcription	Thymus	Thymus
46	chr6:35331200-35337800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:35331200-35350800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:35331400-35331800	Weak transcription	Brain Anterior Caudate	brain
49	chr6:35331400-35332000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:35331400-35332000	Enhancers	Osteobl	bone

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