Variant report

Variant	rs6457815
Chromosome Location	chr6:35330898-35330899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35330201..35332788-chr6:35338848..35341376,3	K562	blood:
2	chr6:35314045..35316677-chr6:35329976..35332837,2	K562	blood:
3	chr6:35322565..35326076-chr6:35326260..35332051,7	K562	blood:
4	chr6:35329439..35333357-chr6:35335770..35342563,9	K562	blood:
5	chr6:35329516..35331357-chr6:35414817..35417634,2	MCF-7	breast:
6	chr6:35328136..35331103-chr6:35385311..35387478,2	MCF-7	breast:
7	chr6:35322678..35326427-chr6:35328080..35332051,5	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1053046	1.00[MEX][hapmap]
rs16868695	1.00[CHD][hapmap]
rs16873902	1.00[CHD][hapmap]
rs16874216	1.00[CHD][hapmap]
rs16876572	1.00[CHD][hapmap]
rs17511800	1.00[CHD][hapmap]
rs1929848	1.00[CHB][hapmap]
rs2395617	1.00[CHB][hapmap]
rs41271257	0.83[ASN][1000 genomes]
rs45440096	0.83[ASN][1000 genomes]
rs45593535	0.83[ASN][1000 genomes]
rs57648364	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59137976	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60889636	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60987797	0.81[AMR][1000 genomes]
rs6457816	1.00[MEX][hapmap]
rs6901410	0.83[AMR][1000 genomes]
rs6902123	0.83[AMR][1000 genomes]
rs6906237	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6919334	1.00[MEX][hapmap]
rs6919534	1.00[CHB][hapmap]
rs6922548	1.00[MEX][hapmap]
rs6937124	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6938138	1.00[CHD][hapmap]
rs729925	1.00[CHB][hapmap]
rs734538	1.00[CHB][hapmap]
rs743965	1.00[CHD][hapmap]
rs763155	1.00[CHB][hapmap]
rs763157	1.00[CHB][hapmap]
rs7739752	1.00[MEX][hapmap]
rs7742865	0.83[ASN][1000 genomes]
rs7746988	1.00[MEX][hapmap]
rs7749479	0.86[ASN][1000 genomes]
rs7751726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs7754871	0.80[AMR][1000 genomes]
rs7770619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296148	1.00[MEX][hapmap]
rs9296149	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9394282	1.00[CHB][hapmap]
rs9462081	1.00[CHB][hapmap]
rs9470000	0.86[AMR][1000 genomes]
rs9470007	1.00[MEX][hapmap]
rs9658077	1.00[CHB][hapmap]
rs9658079	1.00[CHD][hapmap]
rs9658081	1.00[CHB][hapmap]
rs9658085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9658100	1.00[MEX][hapmap]
rs9658119	1.00[CHB][hapmap]
rs9658125	1.00[MEX][hapmap]
rs9658135	1.00[CHD][hapmap]
rs9658149	1.00[CHD][hapmap]
rs9658151	1.00[CHB][hapmap]
rs9942465	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
2	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
3	chr6:35317400-35333000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:35321000-35342400	Weak transcription	Fetal Kidney	kidney
5	chr6:35322000-35336000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:35322200-35331600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:35323800-35331600	Enhancers	Psoas Muscle	Psoas
8	chr6:35324800-35331400	Enhancers	Brain Hippocampus Middle	brain
9	chr6:35325000-35331000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:35325000-35331400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:35325000-35331600	Enhancers	Left Ventricle	heart
12	chr6:35325200-35335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:35325400-35331200	Enhancers	Right Ventricle	heart
14	chr6:35325400-35335600	Weak transcription	Dnd41	blood
15	chr6:35325600-35332000	Genic enhancers	Placenta	Placenta
16	chr6:35325800-35331400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:35326000-35332000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:35326200-35331600	Enhancers	Fetal Thymus	thymus
19	chr6:35326400-35335600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:35326800-35331400	Enhancers	Brain Anterior Caudate	brain
21	chr6:35326800-35331600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:35326800-35331600	Enhancers	Fetal Muscle Trunk	muscle
23	chr6:35327000-35336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:35327600-35335800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:35327800-35331600	Enhancers	Fetal Muscle Leg	muscle
26	chr6:35328400-35331000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:35328400-35331000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:35328400-35332200	Enhancers	Fetal Heart	heart
29	chr6:35328400-35344800	Weak transcription	Fetal Lung	lung
30	chr6:35328600-35331200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:35328600-35331600	Enhancers	Right Atrium	heart
32	chr6:35328600-35331600	Strong transcription	NHEK	skin
33	chr6:35328600-35335200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:35328800-35331000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr6:35328800-35331000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:35328800-35335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:35328800-35336000	Weak transcription	HMEC	breast
38	chr6:35329000-35331400	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr6:35329000-35335200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:35329000-35335200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:35329000-35335800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:35329000-35336600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr6:35329200-35331400	Enhancers	Brain Substantia Nigra	brain
45	chr6:35329200-35334800	Weak transcription	Primary B cells from cord blood	blood
46	chr6:35329200-35335400	Weak transcription	Adipose Nuclei	Adipose
47	chr6:35329200-35335400	Weak transcription	Esophagus	oesophagus
48	chr6:35329200-35335400	Weak transcription	Spleen	Spleen
49	chr6:35329200-35335400	Weak transcription	HepG2	liver
50	chr6:35329200-35336000	Weak transcription	Colon Smooth Muscle	Colon

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