Variant report

Variant	rs6919334
Chromosome Location	chr6:35341875-35341876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35341289..35343258-chr6:35436079..35437756,2	K562	blood:
2	chr6:35335918..35339865-chr6:35340596..35344421,5	K562	blood:
3	chr6:35339706..35342371-chr6:35345441..35347439,2	K562	blood:
4	chr6:35329439..35333357-chr6:35335770..35342563,9	K562	blood:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1053046	0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10755687	0.82[MKK][hapmap]
rs11571504	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13362808	0.82[ASN][1000 genomes]
rs3213573	1.00[JPT][hapmap]
rs3777744	0.82[ASW][hapmap]
rs57648364	0.82[ASN][1000 genomes]
rs59137976	0.82[ASN][1000 genomes]
rs6457813	1.00[JPT][hapmap]
rs6457815	1.00[MEX][hapmap]
rs6457816	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6900530	1.00[JPT][hapmap]
rs6901410	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906237	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs6922548	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937088	0.91[ASN][1000 genomes]
rs6942357	0.96[ASN][1000 genomes]
rs707969	1.00[JPT][hapmap]
rs73413718	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7739752	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746988	1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7754871	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296154	1.00[JPT][hapmap]
rs9470001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470007	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470016	0.82[ASN][1000 genomes]
rs9658067	0.82[ASN][1000 genomes]
rs9658083	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658100	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658119	0.85[GIH][hapmap]
rs9658125	1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv462907	chr6:35333799-35408959	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv602908	chr6:35333799-35408959	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35321000-35342400	Weak transcription	Fetal Kidney	kidney
2	chr6:35328400-35344800	Weak transcription	Fetal Lung	lung
3	chr6:35329000-35350800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:35331200-35350800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:35331600-35345400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:35331600-35345400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:35338200-35344400	Weak transcription	Aorta	Aorta
8	chr6:35338200-35344800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:35338200-35356400	Weak transcription	Pancreas	Pancrea
10	chr6:35338400-35350800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:35338400-35378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:35338600-35344200	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:35338600-35345400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:35338600-35359400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:35338800-35342800	Weak transcription	Thymus	Thymus
16	chr6:35338800-35344800	Weak transcription	Ovary	ovary
17	chr6:35338800-35350600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:35338800-35353400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:35339000-35351000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:35339200-35344800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:35339200-35348600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:35339200-35350200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:35339200-35350600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:35339200-35353400	Weak transcription	Left Ventricle	heart
25	chr6:35339200-35353400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:35339200-35356600	Weak transcription	Esophagus	oesophagus
27	chr6:35339400-35342000	Genic enhancers	Psoas Muscle	Psoas
28	chr6:35339400-35343800	Weak transcription	NHLF	lung
29	chr6:35339400-35345400	Weak transcription	Brain Angular Gyrus	brain
30	chr6:35339400-35346200	Weak transcription	HSMMtube	muscle
31	chr6:35339400-35349400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:35339400-35350800	Weak transcription	Right Atrium	heart
33	chr6:35339400-35353600	Weak transcription	Small Intestine	intestine
34	chr6:35339600-35342000	Strong transcription	HSMM	muscle
35	chr6:35339600-35343800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:35339600-35348400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:35339600-35348600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:35339600-35350800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:35339600-35350800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:35339600-35350800	Weak transcription	Colonic Mucosa	Colon
41	chr6:35339600-35353400	Weak transcription	HMEC	breast
42	chr6:35339600-35353600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr6:35339600-35357800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:35339800-35342000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:35339800-35342000	Strong transcription	Fetal Muscle Leg	muscle
46	chr6:35339800-35342600	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:35339800-35343400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:35339800-35343800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:35339800-35344000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:35339800-35344000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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