Variant report

Variant	rs6937088
Chromosome Location	chr6:35285543-35285544
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35275753..35280306-chr6:35283312..35286403,4	MCF-7	breast:
2	chr6:35284608..35286901-chr6:35310270..35311991,2	MCF-7	breast:
3	chr6:35285529..35287519-chr6:35436021..35437585,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000112033	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10755687	0.82[EUR][1000 genomes]
rs10807150	0.82[EUR][1000 genomes]
rs10947542	0.81[EUR][1000 genomes]
rs11571504	0.91[ASN][1000 genomes]
rs6457816	0.87[ASN][1000 genomes]
rs6901410	0.91[ASN][1000 genomes]
rs6902123	0.91[ASN][1000 genomes]
rs6907364	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6919334	0.91[ASN][1000 genomes]
rs6922548	0.91[ASN][1000 genomes]
rs6942357	0.87[ASN][1000 genomes]
rs73413718	0.87[ASN][1000 genomes]
rs7739752	0.91[ASN][1000 genomes]
rs7754871	0.91[ASN][1000 genomes]
rs9296148	0.91[ASN][1000 genomes]
rs9469982	0.81[EUR][1000 genomes]
rs9470001	0.91[ASN][1000 genomes]
rs9470007	0.91[ASN][1000 genomes]
rs9658083	0.91[ASN][1000 genomes]
rs9658100	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758047	chr6:35168116-35291002	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv2759419	chr6:35168116-35291002	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35265200-35285600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:35271600-35285600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:35276000-35293800	Weak transcription	K562	blood
4	chr6:35278200-35285600	Weak transcription	Colonic Mucosa	Colon
5	chr6:35279000-35285600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:35280200-35285600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:35280200-35285600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:35280600-35285600	Weak transcription	Lung	lung
9	chr6:35280800-35285600	Strong transcription	Fetal Thymus	thymus
10	chr6:35280800-35293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:35281000-35285600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:35281000-35285800	Weak transcription	NHEK	skin
13	chr6:35281600-35291600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr6:35282000-35293400	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:35282000-35293600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr6:35282000-35293800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:35282200-35293600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr6:35282600-35293600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:35282800-35293600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:35283400-35293400	Strong transcription	Primary B cells from cord blood	blood
21	chr6:35283800-35293400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:35284000-35285800	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr6:35284000-35291600	Strong transcription	Dnd41	blood
24	chr6:35284000-35293000	Strong transcription	Primary T cells from cord blood	blood
25	chr6:35284000-35293400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:35284200-35286000	Strong transcription	Primary hematopoietic stem cells	blood
27	chr6:35284200-35290800	Strong transcription	GM12878-XiMat	blood
28	chr6:35284200-35293400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:35284400-35292800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:35284400-35293600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:35284800-35290600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:35285000-35285600	Strong transcription	Spleen	Spleen
33	chr6:35285200-35285600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
34	chr6:35285200-35285600	Genic enhancers	Duodenum Mucosa	Duodenum
35	chr6:35285200-35285600	Enhancers	Fetal Intestine Small	intestine
36	chr6:35285200-35285600	Enhancers	Fetal Muscle Leg	muscle
37	chr6:35285200-35285600	Enhancers	Placenta	Placenta
38	chr6:35285200-35285600	Bivalent Enhancer	NHLF	lung
39	chr6:35285200-35286000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:35285200-35286000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
41	chr6:35285200-35286000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
42	chr6:35285200-35286600	Active TSS	Brain Anterior Caudate	brain
43	chr6:35285200-35286800	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr6:35285200-35286800	Active TSS	A549	lung
45	chr6:35285200-35290800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
46	chr6:35285200-35292800	Strong transcription	Thymus	Thymus
47	chr6:35285400-35285600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:35285400-35285600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:35285400-35285600	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:35285400-35285600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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