Variant report

Variant	rs6902123
Chromosome Location	chr6:35330421-35330422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35330201..35332788-chr6:35338848..35341376,3	K562	blood:
2	chr6:35314045..35316677-chr6:35329976..35332837,2	K562	blood:
3	chr6:35322565..35326076-chr6:35326260..35332051,7	K562	blood:
4	chr6:35328832..35330634-chr6:35333716..35335607,2	K562	blood:
5	chr6:35315105..35319537-chr6:35325978..35330834,4	K562	blood:
6	chr6:35329439..35333357-chr6:35335770..35342563,9	K562	blood:
7	chr6:35329516..35331357-chr6:35414817..35417634,2	MCF-7	breast:
8	chr6:35328136..35331103-chr6:35385311..35387478,2	MCF-7	breast:
9	chr6:35328087..35330643-chr6:35436119..35437805,2	MCF-7	breast:
10	chr6:35322678..35326427-chr6:35328080..35332051,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198755	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1053046	1.00[JPT][hapmap]
rs11571504	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13362808	0.82[ASN][1000 genomes]
rs3213573	1.00[JPT][hapmap]
rs57648364	0.82[ASN][1000 genomes]
rs59137976	0.82[ASN][1000 genomes]
rs6457813	1.00[JPT][hapmap]
rs6457815	0.83[AMR][1000 genomes]
rs6457816	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6900530	1.00[JPT][hapmap]
rs6901410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906237	1.00[JPT][hapmap]
rs6919334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937088	0.91[ASN][1000 genomes]
rs6942357	0.96[ASN][1000 genomes]
rs707969	1.00[JPT][hapmap]
rs73413718	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7739752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746988	1.00[JPT][hapmap]
rs7754871	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296154	1.00[JPT][hapmap]
rs9470001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470016	0.82[ASN][1000 genomes]
rs9658067	0.82[ASN][1000 genomes]
rs9658083	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658125	1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35311800-35331000	Weak transcription	Hela-S3	cervix
2	chr6:35313000-35335600	Weak transcription	Small Intestine	intestine
3	chr6:35317400-35333000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:35321000-35342400	Weak transcription	Fetal Kidney	kidney
5	chr6:35322000-35336000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:35322200-35331600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:35323800-35331600	Enhancers	Psoas Muscle	Psoas
8	chr6:35324800-35331400	Enhancers	Brain Hippocampus Middle	brain
9	chr6:35325000-35330600	Weak transcription	HUVEC	blood vessel
10	chr6:35325000-35331000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:35325000-35331400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:35325000-35331600	Enhancers	Left Ventricle	heart
13	chr6:35325200-35335800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:35325400-35331200	Enhancers	Right Ventricle	heart
15	chr6:35325400-35335600	Weak transcription	Dnd41	blood
16	chr6:35325600-35330600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:35325600-35332000	Genic enhancers	Placenta	Placenta
18	chr6:35325800-35331400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:35326000-35332000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:35326200-35331600	Enhancers	Fetal Thymus	thymus
21	chr6:35326400-35335600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr6:35326800-35331400	Enhancers	Brain Anterior Caudate	brain
23	chr6:35326800-35331600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:35326800-35331600	Enhancers	Fetal Muscle Trunk	muscle
25	chr6:35327000-35336200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:35327400-35330600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:35327600-35330600	Enhancers	HSMMtube	muscle
28	chr6:35327600-35335800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:35327800-35331600	Enhancers	Fetal Muscle Leg	muscle
30	chr6:35328400-35331000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:35328400-35331000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr6:35328400-35332200	Enhancers	Fetal Heart	heart
33	chr6:35328400-35344800	Weak transcription	Fetal Lung	lung
34	chr6:35328600-35330800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:35328600-35330800	Enhancers	K562	blood
36	chr6:35328600-35331200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:35328600-35331600	Enhancers	Right Atrium	heart
38	chr6:35328600-35331600	Strong transcription	NHEK	skin
39	chr6:35328600-35335200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:35328800-35330600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr6:35328800-35330600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr6:35328800-35330600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:35328800-35330600	Weak transcription	Fetal Intestine Large	intestine
44	chr6:35328800-35330800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:35328800-35330800	Weak transcription	Aorta	Aorta
46	chr6:35328800-35331000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr6:35328800-35331000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:35328800-35335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:35328800-35336000	Weak transcription	HMEC	breast
50	chr6:35329000-35330600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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